| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,134,118 – 7,134,221 |
| Length | 103 |
| Max. P | 0.721943 |
| Location | 7,134,118 – 7,134,221 |
|---|---|
| Length | 103 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 74.51 |
| Shannon entropy | 0.46811 |
| G+C content | 0.34509 |
| Mean single sequence MFE | -19.64 |
| Consensus MFE | -10.56 |
| Energy contribution | -10.54 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.721943 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7134118 103 + 27905053 ----CUCCCUUAUCCUGCUGCCCGAUUUCACGUAUUUCGGCGAAAUUAUUUUAUAAUGAAUGUUC-GUAUUUAGCUAAAGUUUUAUGAAUGGCUUUCAUUAUGGACGG----------- ----.................((((((((.((.....))..)))))...(((((((((((.((((-(((...(((....))).)))))))....))))))))))))))----------- ( -20.10, z-score = -0.76, R) >droAna3.scaffold_13340 13005501 98 - 23697760 --------------------CCUGAUUUUACGUUUUUCGCCGAAAUUAUUUUAUAAUGAAUGUUC-GUAUUUAGCCAAAGUUUUAUGAAUGGCUUUCAUUACGGGAGUGCCAGCACAGU --------------------(((((((((.((.....))..))))).......(((((((.((((-(((...(((....))).)))))))....))))))))))).(((....)))... ( -17.50, z-score = -0.02, R) >droEre2.scaffold_4770 3261637 103 - 17746568 ----CUCCCAAAUCCUGGUGCCCGAUUUCACGUAUUUCGGCGAAAUUAUUUUAUAAUGAAUGUUC-GUAUUUAGCUAAAGUUUUAUGAAUGGCUUUCAUUAUGCACGU----------- ----.............((((..((((((.((.....))..)))))).....((((((((.((((-(((...(((....))).)))))))....))))))))))))..----------- ( -21.90, z-score = -1.47, R) >droYak2.chr3R 11170209 103 + 28832112 ----CUCCCUUAUCCUGCUGCCCGAUUUCACGUAUUUCGGCGAAAUUAUUUUAUAAUGAAUGUUC-GUAUUUAGCUAAAGUUUUAUGAAUGGCUUUCAUUAUGCACGU----------- ----...........(((.....((((((.((.....))..)))))).....((((((((.((((-(((...(((....))).)))))))....)))))))))))...----------- ( -18.50, z-score = -0.75, R) >droSec1.super_0 6299929 103 - 21120651 ----CUCCCUUAUCCUGCUGCCCGAUUUCACGUAUUUCGCCGAAAUUAUUUUAUAAUGAAUGUUC-GUAUUUAGCUAAAGUUUUAUGAAUGGCUUUCAUUAUGGACGG----------- ----.................((((((((.((.....))..)))))...(((((((((((.((((-(((...(((....))).)))))))....))))))))))))))----------- ( -19.00, z-score = -0.89, R) >droSim1.chr3R 13291812 103 - 27517382 ----CUCCCUUAUCCUGCUGCCCGAUUUCACGUAUUUCGGCGAAAUUAUUUUAUAAUGAAUGUUC-GUAUUUAGCUAAAGUUUUAUGAAUGGCUUUCAUUAUGGACGG----------- ----.................((((((((.((.....))..)))))...(((((((((((.((((-(((...(((....))).)))))))....))))))))))))))----------- ( -20.10, z-score = -0.76, R) >droPer1.super_6 1537525 82 - 6141320 --------------------------CUCACCUUUUUCGGCGAAAUUAUUAUAUAAUGAAUGUUCCGUAUUUAGCCAAAGUUUUAUGAAUGGCUUUCAUUAUAGAAGC----------- --------------------------.((.((......)).))........(((((((((.(((...(((..(((....)))..)))...))).))))))))).....----------- ( -13.30, z-score = -0.61, R) >dp4.chr2 1516014 82 - 30794189 --------------------------CUCACCUUUUUCGGCGAAAUUAUUUUAUAAUGAAUGUUCCGUAUUUAGCCAAAGUUUUAUGAAUGGCUUUCAUUAUAGAAGC----------- --------------------------.((.((......)).)).....((((((((((((.(((...(((..(((....)))..)))...))).))))))))))))..----------- ( -16.10, z-score = -1.72, R) >droWil1.scaffold_181089 8021861 114 - 12369635 AUGCCUCCCUCUUUCUGUAAC----UUUUACAUUUUUCGGCGAAAUUAUUUUAUAAUGAAUGUUC-GUAUUUAGCUAAAGUUUUAUGAAUGGCUUUCAUUAUAAAAUCCGAGGGUGAGC ..(((.(((((....((((..----...))))......((.......(((((((((((((.((((-(((...(((....))).)))))))....)))))))))))))))))))).).)) ( -28.11, z-score = -3.12, R) >droGri2.scaffold_15074 36491 82 - 7742996 -------------------------UCGUUCUUUGCGGAGCGAAAUUAUUUUAUAAUGAAUGUUC-GUAUUUAGCUAAAGUUUUAUGAAUGGCGUUCAUUAUGGGCUC----------- -------------------------(((((((....)))))))......((((((((((((((((-(((...(((....))).)))))...))))))))))))))...----------- ( -23.30, z-score = -3.41, R) >droMoj3.scaffold_6540 13777836 82 - 34148556 -------------------------UCCAUAUUUUUUGGGCGAAAUUAUUUUAUAAUGAAUGUUC-GUAUUUAGCUAAAGUUUCAUGAAUGGCGUUCAUUACGGGCGC----------- -------------------------.(((.......)))(((.......((..(((((((((((.-.(((..(((....)))..)))...)))))))))))..)))))----------- ( -14.81, z-score = -0.28, R) >droVir3.scaffold_13047 15874354 82 - 19223366 -------------------------UCGUUCUUUUUAGGGCGAAAUUAUUUUAUAAUGAAUGUUC-GUAUUUAGCUAAAGUUUUAUGAAUGGCGUUCAUUAUGGGCAC----------- -------------------------(((((((....)))))))......((((((((((((((((-(((...(((....))).)))))...))))))))))))))...----------- ( -23.00, z-score = -4.23, R) >consensus ____________________C____UUUCACGUUUUUCGGCGAAAUUAUUUUAUAAUGAAUGUUC_GUAUUUAGCUAAAGUUUUAUGAAUGGCUUUCAUUAUGGACGC___________ ...................................................(((((((((.(((...(((..(((....)))..)))...))).)))))))))................ (-10.56 = -10.54 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:05:52 2011