| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,006,895 – 7,006,994 |
| Length | 99 |
| Max. P | 0.589641 |
| Location | 7,006,895 – 7,006,994 |
|---|---|
| Length | 99 |
| Sequences | 8 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 66.15 |
| Shannon entropy | 0.68253 |
| G+C content | 0.40644 |
| Mean single sequence MFE | -24.90 |
| Consensus MFE | -9.57 |
| Energy contribution | -9.10 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.75 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.589641 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7006895 99 - 23011544 -AGUC--AUCUAUUAUUUGGGCUAUGACGAGUUCAGCAUUAGAUUCUUCGACCUUUUCUCGAAGUUUGAUAAUUGGCAGCUGAUGCCAAUGUAUCGGCAGGU----- -.(((--(((((....(((((((......)))))))...))))).((((((.......))))))...(((((((((((.....))))))).)))))))....----- ( -28.00, z-score = -1.65, R) >droSim1.chr2L 6796418 99 - 22036055 -AGUC--AUCUAUUAUUUGGGCUAUGACGAGCUAAGCAUUAGAUUCUUCGACCUUUUCUUGAAGGUUGAUAAUUGGCAGCUGAUGCCAAUGUAUCGGCAGGU----- -.(((--(((((.......((((......))))......))))....(((((((((....)))))))))....)))).((((((((....))))))))....----- ( -31.22, z-score = -2.40, R) >droSec1.super_3 2532750 99 - 7220098 -AGUC--AUAUAUUAUUUGGGCUAUGACGAGCUAAGCAUUAGAUUCUUCGACCUUUUCUCGAAGGUUGAUAAUUGGCAGCUGAUGCCAAUGUAUCGGCAGGU----- -.(((--(((............))))))..(((((..(((((..(((((((.......))))))))))))..))))).((((((((....))))))))....----- ( -29.60, z-score = -2.00, R) >droYak2.chr2L 16414870 99 + 22324452 -AGUC--AUCUAUUAUUUGGGCUAUGACGAGUAAAGCAUUAGAUUCUUCGACCUUUUCUCAAAGGUUGAUAAUUGGCAGCUGAUGCCAAUGUAUCGGCAGGU----- -.(((--((((((((((((........))))))).....))))....(((((((((....)))))))))....)))).((((((((....))))))))....----- ( -28.90, z-score = -2.12, R) >droEre2.scaffold_4929 15915882 99 - 26641161 -AGUC--AUCUAUUAUUUGGGCUAUGGCGAGAAAAGCAUUAGAUUCUUCGACCUUUUCUCGAAGGUUGAUAAUUGGCAGCCGAUGCCAAAGUAUCGGCAGGU----- -.(((--(..(((((.....(((....(((((((((.....((....))...)))))))))..))))))))..)))).((((((((....))))))))....----- ( -31.40, z-score = -2.27, R) >droAna3.scaffold_12916 79448 93 - 16180835 -AGUCAGAUCUCUGAGUCAG---AUGAUGAGUAUUGUAAAAAA----UCUACCUUUUC-CGAGGGUUUAUAACUGGCAGUUGACGCUGAUGUGCCGGCAGGU----- -..((((....))))(((((---.((.(.(((..((((((...----....((((...-.)))).))))))))).))).)))))((((......))))....----- ( -20.70, z-score = 0.52, R) >droWil1.scaffold_180772 1665102 99 + 8906247 AAUACAGAAUUUUUAAACAC----AAAUGAGUUAAUCCAAAUCCUUUGCCAUCUUAAUAUCGAAUUUCAU---UGG-AAUUGAAGUGAAAACAUCAGAAAGUCAUCU ....................----..((((.((........(((..((...((........))....)).---.))-).((((.((....)).)))).)).)))).. ( -9.90, z-score = 1.06, R) >droVir3.scaffold_12963 3446042 85 - 20206255 AAGUC--AACAUUAAAAUGCCCUGAUAUAAGCCGGGCAUU----------AUUUGUUCUC-----UCUAUAAAUAGCAGCUGACGCCUAGACGGCGGCCGAU----- ..(((--(.(.....(((((((.(.......).)))))))----------((((((....-----...))))))....).))))(((.....))).......----- ( -19.50, z-score = -0.27, R) >consensus _AGUC__AUCUAUUAUUUGGGCUAUGACGAGUUAAGCAUUAGAUUCUUCGACCUUUUCUCGAAGGUUGAUAAUUGGCAGCUGAUGCCAAUGUAUCGGCAGGU_____ ..............................................................................((((((((....))))))))......... ( -9.57 = -9.10 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:22:45 2011