| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,108,054 – 7,108,160 |
| Length | 106 |
| Max. P | 0.985645 |
| Location | 7,108,054 – 7,108,160 |
|---|---|
| Length | 106 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 86.10 |
| Shannon entropy | 0.22917 |
| G+C content | 0.44782 |
| Mean single sequence MFE | -26.00 |
| Consensus MFE | -19.71 |
| Energy contribution | -19.59 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.86 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.21 |
| SVM RNA-class probability | 0.985645 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7108054 106 - 27905053 UGUUUUGUGUGUGUGUUUUUGUGUGCACCGACCGUCACCUCCCCCCGCUCUGCUUUUUUGAAGCCUGUUCAUAGAACACGCACGCAAAAUAUAAAUGUUAAAAAUA (((((((((((((((((((.(((.(((..((.((...........)).)).(((((...))))).))).))))))))))))))))))))))............... ( -30.30, z-score = -4.59, R) >droSec1.super_0 6274017 106 + 21120651 UGUUUUGUGUGUGUGUUUUUGUGUGCACCGCCCGUCGCCACCCCCCGCUCUGCUCCUUUAAAGCCUGUUCAUAGAACACGCACGCAAAAUAUAAAUGUUAAAAAUA (((((((((((((((((((.(((.(((.........((........))...(((.......))).))).))))))))))))))))))))))............... ( -29.20, z-score = -4.29, R) >droYak2.chr3R 11143342 103 - 28832112 ---UGGGUGUGUGUGUUUUUGUGUGCACCGCCCGUCACCACCCCCCGCUCUGCUCCUUUGAAGCCUGUUCAUAGAACACGCACGCAAAAUAUAAAUGUUAAAAAUA ---...(((((((((((((.(((.(((..((...(((.....................))).)).))).))))))))))))))))..................... ( -22.50, z-score = -0.55, R) >droEre2.scaffold_4770 3235481 89 + 17746568 -------UGUGCGUGUUUUUGUGUGCACCG----------CCACCCGCACUGCUCCUUCGAAGCCUGUUCAUAAAACACGCACGCAAAAUAUAAAUGUUAAAAAUA -------.(((((((((((.(((.(((..(----------(.....))...(((.......))).))).))))))))))))))....................... ( -22.00, z-score = -2.01, R) >consensus ___UUUGUGUGUGUGUUUUUGUGUGCACCGCCCGUCACCACCCCCCGCUCUGCUCCUUUGAAGCCUGUUCAUAGAACACGCACGCAAAAUAUAAAUGUUAAAAAUA ......(((((((((((((.(((.(((.((...............))....(((.......))).))).))))))))))))))))..................... (-19.71 = -19.59 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:05:46 2011