| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,105,900 – 7,105,990 |
| Length | 90 |
| Max. P | 0.828268 |
| Location | 7,105,900 – 7,105,990 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 78.40 |
| Shannon entropy | 0.42440 |
| G+C content | 0.37174 |
| Mean single sequence MFE | -12.00 |
| Consensus MFE | -9.46 |
| Energy contribution | -9.46 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.828268 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 7105900 90 + 27905053 ---AGCCGCCAUUUUGUUUUUUCCACUUAUU----UUCUCAUUUUCGUUCGCCCGUUUCACUCGCAUAUAGAAAAUAAAAUGCCGCAACAUACAAAG-------- ---.((.((.((((((((((((.........----....(......)...((..(.....)..))....)))))))))))))).))...........-------- ( -9.60, z-score = -0.96, R) >droSim1.chr3R 13262106 90 - 27517382 ---AGCCGCCAUUUUGUUUUUUCCACUUAUU----UUCUCAUUUUCGUUCGCCCGUUUCACUCGCAUAUAGAAAAUAAAAUGCCGCAACAUACAAAG-------- ---.((.((.((((((((((((.........----....(......)...((..(.....)..))....)))))))))))))).))...........-------- ( -9.60, z-score = -0.96, R) >droSec1.super_0 6271814 90 - 21120651 ---AGCCGCCAUUUUGUUUUUUCCACUUAUU----UUCUCAUUUUCGUUCGCCCGUUUCACUCGCAUAUAGAAAAUAAAAUGCCGCAACAUACAAAG-------- ---.((.((.((((((((((((.........----....(......)...((..(.....)..))....)))))))))))))).))...........-------- ( -9.60, z-score = -0.96, R) >droYak2.chr3R 11141161 94 + 28832112 ---AGCCGCCAUUUUGUUUUUUCCACUUAUU----UUCUCAUUUUCG----CCCGUUUCACUCGCAUAUAGAAAAUAAAAUGCCGCAACAUACAAAGGCAGUGGC ---.(((((.................(((((----((((.((....(----(..(.....)..))..)))))))))))..((((............))))))))) ( -16.80, z-score = -1.19, R) >droEre2.scaffold_4770 3233169 94 - 17746568 ---AGCCGCCAUUUUGUUUUUUCCACUUAUU----UUCUCAUUUUCG----CCCGUUUCACUCGCAUAUAGAAAAUAAAAUGCCGCAACAUACAAAGGCGGUGGC ---.((((((................(((((----((((.((....(----(..(.....)..))..)))))))))))...(((............))))))))) ( -20.10, z-score = -1.80, R) >droAna3.scaffold_13340 12971202 95 - 23697760 --AAGCCGCCAUUUUGUUUUUUCCAUUUAUU----UUCUCAUUUUCG----CUCGUUUCAGUCGCAUAUAGAAAAUAAAAUGCCGCAACAUACUCGCACGGAAAG --.................(((((.((((((----((((.((...((----((......)).))...)))))))))))).....((.........))..))))). ( -13.30, z-score = -0.43, R) >dp4.chr2 18274 86 - 30794189 ACAAGCCGCCAUUUUGUUUUUUGUCUUUCCU------UUUUUCGCCG-----CUUUUUCUCUCGCAUAUAGAAAAUAAAAUGCCGCAACAUGCAACA-------- ....((.((.((((((((((((((.......------..........-----...............)))))))))))))))).))...........-------- ( -12.05, z-score = -0.67, R) >droPer1.super_6 1506662 86 - 6141320 ACAAGCCGCCAUUUUGUUUUUUGUCUUUCCU------UUUUUCGCCG-----CUUUUUCUCUCGCAUAUAGAAAAUAAAAUGCCGCAACAUGCAACA-------- ....((.((.((((((((((((((.......------..........-----...............)))))))))))))))).))...........-------- ( -12.05, z-score = -0.67, R) >droWil1.scaffold_181089 7991227 85 - 12369635 ---AGCCGCCAUUUUGUUUUUUCCUUUUUUUGUU-UUCUCAUUUUCG----UUCGUUUC----GCAUAUAGAAAAUAAAAUGCCGCAACAUCCCAAU-------- ---.((.((.((((((((((((........((..-....)).....(----(.......----))....)))))))))))))).))...........-------- ( -9.80, z-score = -1.32, R) >droVir3.scaffold_13047 15840576 80 - 19223366 ---AGCCGCCAUUUUGUUUUUUU--CUUAUU----UUCUCAUUUUCG----CUCGUUUC----GCAUAUAGAAAAUAAAAUGCCGCAACAUCCACAA-------- ---.((.((.((((((((((((.--......----............----........----......)))))))))))))).))...........-------- ( -10.41, z-score = -1.41, R) >droMoj3.scaffold_6540 13742774 81 - 34148556 ---AGCCGCCAUUUUGUUUUUUUCUUAUUUUCUCAUUUUCAUUUUCG----CUCGUUUC----GCAUAUAGAAAAUAAAAUGCCGCAACAUC------------- ---.((.((.((((((((((((.........................----........----......)))))))))))))).))......------------- ( -10.23, z-score = -1.30, R) >droGri2.scaffold_15074 3548 80 - 7742996 ---AGCCGCCAUUUUGUUUUUUU--UUUAUU----UUCUCAUUUUCG----CUCGUUUC----GCAUAUAGAAAAUAAAAUGCCGCAACAUCCACAA-------- ---.((.((.((((((((((((.--......----............----........----......)))))))))))))).))...........-------- ( -10.41, z-score = -1.33, R) >consensus ___AGCCGCCAUUUUGUUUUUUCCACUUAUU____UUCUCAUUUUCG____CCCGUUUCACUCGCAUAUAGAAAAUAAAAUGCCGCAACAUACAAAG________ ....((.((.((((((((((((...............................................)))))))))))))).))................... ( -9.46 = -9.46 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:05:45 2011