| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,079,442 – 7,079,551 |
| Length | 109 |
| Max. P | 0.645782 |
| Location | 7,079,442 – 7,079,551 |
|---|---|
| Length | 109 |
| Sequences | 7 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 68.46 |
| Shannon entropy | 0.64154 |
| G+C content | 0.34663 |
| Mean single sequence MFE | -21.93 |
| Consensus MFE | -5.16 |
| Energy contribution | -7.43 |
| Covariance contribution | 2.27 |
| Combinations/Pair | 1.48 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.24 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.645782 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7079442 109 - 27905053 AAAUACAACGAAAGCGAGUUAUAGGUUAUAGGUUAGCGAAAGGAC--UAUAGCCAAACCAAACUCCAGUUAA-ACAACUCAAGCAUUUCUCAGCGCUUUCAAUAUUUCGUUG .........(((((((((((...((((((((.....(....)..)--)))))))......(((....)))..-..)))))..((........))))))))............ ( -26.60, z-score = -3.68, R) >droSim1.chr3R 13232278 109 + 27517382 AAAUACAACGAAAUCGAGUUAUAGGUUAUAGGUUCGCGAAAGGAC--UAUAGCCAAACCGAACUCUAGUUUA-ACAACUCAAGCAUUUCACAGCGCUUUCAAUAUUUCGUUG .....(((((((((.(((((...((((((((..((.(....))))--))))))).....((((....)))).-..)))))((((..........)))).....))))))))) ( -28.70, z-score = -4.23, R) >droSec1.super_0 6245284 109 + 21120651 AAAUACAACGAAAUCGAGUUAUAGGUUAUAGGUUCGCGAAAGGAC--UAUAGCCAAACCGAACUCUAGUUUA-ACAACUCAAGCAUUUUACAGCGCUUUCAAUAUUUCGUUG .....(((((((((.(((((...((((((((..((.(....))))--))))))).....((((....)))).-..)))))((((..........)))).....))))))))) ( -28.70, z-score = -4.12, R) >droYak2.chr3R 11112854 109 - 28832112 AAAUACAACGAAAUCGAGUUAUAGGUUAUAGGUUAGCGAAAAGAC--UAUAGCCAAGCCGAACUCAAGUUUA-AGAACUCUAGCAUUUCUCAGCGCUUUCAAUAUUUCGUUG .....(((((((((.(((((...((((((((.............)--))))))).....((((....)))).-..)))))..((........)).........))))))))) ( -25.62, z-score = -2.34, R) >droEre2.scaffold_4770 3205739 110 + 17746568 -AACACAACUAAAUCGAGUUAUAGGUUAUAGGUUAGCGAAAGGACUAUAUAGCCAAACCGAAAUCAAGUUUA-AUAUCUCAAGCAUUUCUCAGCGCUUUCAAUAUUUCGUUG -....((((....(((.(((...(((((((((((..(....))))).))))))).))))))......(...(-((((...((((..........))))...))))).))))) ( -18.30, z-score = -1.02, R) >droAna3.scaffold_13340 12944655 96 + 23697760 ---------AAAAAUAAGUAAUUCAAAACAGAAUCGCAAC-------CGAAACCGUACAAAUUUCAAAUACAUAUUAUUAGGACACUUUUUGGCGCUUUCAAUAUUUUGUUG ---------.((((((.(..((((......))))..)...-------.((((.(((.((((.(((.((((.....)))).))).....))))))).))))..)))))).... ( -12.00, z-score = -0.63, R) >triCas2.ChLG8 5288019 99 - 15773733 ----------AAAUCUAAU-AGAGUUGGAAUGUCGACUGAACUACAAACUGUUAAAAUGUAAUUAAAGUUAAAAAACCUGUGCCAUUUUU--GCACUAGUAGUACGUUUUUG ----------.........-..((((((....))))))(.(((((.((((.((((.......)))))))).........((((.......--))))..))))).)....... ( -13.60, z-score = 0.42, R) >consensus AAAUACAACGAAAUCGAGUUAUAGGUUAUAGGUUAGCGAAAGGAC__UAUAGCCAAACCGAACUCAAGUUUA_ACAACUCAAGCAUUUCUCAGCGCUUUCAAUAUUUCGUUG .....((((((((..(((((...((((...((((................)))).)))).)))))...............((((..........))))......)))))))) ( -5.16 = -7.43 + 2.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:05:39 2011