| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,999,791 – 6,999,903 |
| Length | 112 |
| Max. P | 0.556048 |
| Location | 6,999,791 – 6,999,903 |
|---|---|
| Length | 112 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 77.92 |
| Shannon entropy | 0.46735 |
| G+C content | 0.51062 |
| Mean single sequence MFE | -35.64 |
| Consensus MFE | -19.95 |
| Energy contribution | -20.20 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.556048 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6999791 112 + 23011544 ---AGGAGCAGCAACGACGACAGCAAAGCGGCCAGCCAAUGCGAAUUGGCUGCCGUCGAUUGUUUCAUUUUGGCCCGAUUUAAUGCCCAGUUAAGCGCGUUGG---UUUCUUGCCAAU ---.(((((((...((((....((...))(((.(((((((....)))))))))))))).)))))))...(((((..((.(((((((.(......).)))))))---..))..))))). ( -39.30, z-score = -1.66, R) >droSim1.chr2L 6788565 112 + 22036055 ---AGGAGCAGCAACGACGACAGCAAAGCGGCCAGCCAAUGCGAAUUGGCUGCCGUCGAUUGUUUCAUUUUGGCCCGAUUUAAUGCCCAGUUAAGCGCGGUGG---UUUCUUGCCAAU ---.(((((((...((((....((...))(((.(((((((....)))))))))))))).)))))))......(((((.((((((.....)))))))).)))((---(.....)))... ( -36.80, z-score = -0.55, R) >droSec1.super_3 2525676 112 + 7220098 ---AGGAGCAGCAACGACGACAGCAAAGCGGCCAGCCAAUGCGAAUUGGCUGCCGUCGAUUGUUUCAUUUUGGCCCGAUUUAAUGCCCAGUUAAGCGCGGUGG---UUUCUUGCCAAU ---.(((((((...((((....((...))(((.(((((((....)))))))))))))).)))))))......(((((.((((((.....)))))))).)))((---(.....)))... ( -36.80, z-score = -0.55, R) >droEre2.scaffold_4929 15908652 112 + 26641161 ---AGGAGCAGCAACGACGACAGCAAAGCGGCCAGCCAAUGCGAAUUGGCUGCCGUCGAUUGUUUCAUUUUGGCCCGAUUUAAUGCCCAGUUAAGCGCGGUGG---UUUGUUGCCAAU ---..(.((((((..(((((.(((((.(((((.(((((((....))))))))))))...)))))))......(((((.((((((.....)))))))).))).)---)))))))))... ( -38.10, z-score = -0.82, R) >droYak2.chr2L 16407676 112 - 22324452 ---AGGAGCAGCAGCGACGACAGCAAAGCGGCCAGCCAAUGCGAAUUGGCUGCCGUCGAUUGUUUCAUUUUGGCCCGAUUUAAUGCCCAGUUAAGCGCGGUGC---UUUGUUGCCAAU ---..(.((((((((((((((.((...))(((.(((((((....)))))))))))))).))))........((((((.((((((.....))))))..))).))---).)))))))... ( -39.40, z-score = -0.86, R) >droAna3.scaffold_12916 72098 112 + 16180835 ---AAAAACAGUAACGACGACAGCAAAGCGGCCAGCCAAUGCGAAUUGGCUGCCGUCGGUUGGUUCAUGUUGGCCCGAUUUAAUUCACAAUUAAGCCCAGAGU---UUGGUUACCAAU ---.......(((((((...((((...(((((.(((((((....))))))))))))..))))..)).....(((..((((........))))..)))......---...))))).... ( -32.50, z-score = -1.29, R) >dp4.chr4_group1 1536945 115 - 5278887 ---CACAGCAGCAACGACGACAGCAAAGCGGCCAGCCAAUGCGAAUUGGCUGCCGUCGAAUGGUUCAUGUUGGCCCGAUUAAAUGACCAAUUGAGCGCAAAGUCGUCUGGUCAACAAU ---............((((((.((...(((((.(((((((....))))))))))))......(((((.(((((.............))))))))))))...))))))........... ( -37.82, z-score = -1.39, R) >droPer1.super_5 1534162 115 + 6813705 ---CACAGCAGCAACGACGACAGCAAAGCGGCCAGCCAAUGCGAAUUGGCUGCCGUCGAAUGGUUCAUGUUGGCCCGAUUAAAUGACCAAUUGAGCGCAAAGUCGUCUGGUCAACAAU ---............((((((.((...(((((.(((((((....))))))))))))......(((((.(((((.............))))))))))))...))))))........... ( -37.82, z-score = -1.39, R) >droWil1.scaffold_180772 1655714 93 - 8906247 ---AAUAACAGCAAAGACACCAGCAAAGCGGCCAGCCAAUGCGAAUUGGCUGCCGUCGAUUUGUUCAUGUUG--CCGACUUAAAGCCAAUUAAAGUUC-------------------- ---.......(((...(((..(((((((((((.(((((((....))))))))))))...))))))..)))))--).(((((.((.....)).))))).-------------------- ( -26.60, z-score = -2.19, R) >droMoj3.scaffold_6500 13810531 106 + 32352404 ---AUUACCAGCACCAGCGACAGCAAUGCGGCCAGCCAAUGCGAAUUGGCUGCCGUCGUUUUGGCCAUGUUUUGCCGAUUUAAGGCCAAUUAAAGUUGAAUGG------GGCAGC--- ---.......((.(((....((((((((((((.(((((((....))))))))))).))))((((((.................)))))).....))))..)))------.))...--- ( -37.23, z-score = -1.18, R) >droVir3.scaffold_12963 3436211 104 + 20206255 ---ACCACCAGCAGCAACGACAGCAGAGCGGCCAGCCAAUGCGAAUUGGCUGCCGUCGACUUGAUCAUGUUG--CCGAUUUAAUGCCAAUUAAAGUUGAAUUG------GACAGC--- ---.....(((((.(((((((.((...))(((.(((((((....))))))))))))))..)))....)))))--((((((((((..........)))))))))------).....--- ( -33.80, z-score = -2.37, R) >droGri2.scaffold_15252 2998891 107 + 17193109 ACCACCAGCAACAACAACGACAACAAUGCGGCCAGCCAAUGCGAAUUGGCUGCCGUCGGUUUGGUCAUGUUU--CCGAUUUAAUGCCAAUUAAUGUUGAAUGG------GUCAGC--- ....(((.(((((.....(((.((...(((((.(((((((....))))))))))))..))...)))......--.....(((((....))))))))))..)))------......--- ( -31.50, z-score = -0.69, R) >consensus ___AGGAGCAGCAACGACGACAGCAAAGCGGCCAGCCAAUGCGAAUUGGCUGCCGUCGAUUGGUUCAUGUUGGCCCGAUUUAAUGCCCAGUUAAGCGCAAUGG___UUUGUUACCAAU .................((((.((...))(((.(((((((....))))))))))))))............................................................ (-19.95 = -20.20 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:22:44 2011