| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,059,347 – 7,059,446 |
| Length | 99 |
| Max. P | 0.796912 |
| Location | 7,059,347 – 7,059,446 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 86.58 |
| Shannon entropy | 0.17831 |
| G+C content | 0.29121 |
| Mean single sequence MFE | -18.97 |
| Consensus MFE | -15.10 |
| Energy contribution | -15.22 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.796912 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7059347 99 + 27905053 AAACAUACGAUGGCUUUAGGAAAUAAAAACUUAUUGCCAUUGUAGAGAUUAUCAUGGAAUGCGGUUAUGACUAAUUGAUCCAACGUAUUUAAAUUUUUU---- ..((.(((((((((..((((.........))))..)))))))))..........((((...((((((....)))))).))))..)).............---- ( -21.70, z-score = -2.64, R) >droSim1.chr3R 14310469 92 + 27517382 UAAAACACGAUGGCUUUGGGAAAUAAAAAGUUAUUGCCAUUGUAGAGAUUAUUAUGGAAUGCGGUUAUGACUAA---------CGUAUUUACAUUUUUUUU-- ......((((((((..(((...........)))..))))))))..........((((((((((...........---------))))))).))).......-- ( -16.10, z-score = -1.11, R) >droSec1.super_0 6221163 94 - 21120651 AAACAUACGAUGGCUUUGGGAAAUAAAAAGUUAUUGCCAUUGUAGAGAUUAUUAUGGAAUGCGGUUAUGACUAA---------CGUAUUUACAUUUUUUUUUU .....(((((((((..(((...........)))..)))))))))((((..(..((((((((((...........---------))))))).)))..)..)))) ( -19.10, z-score = -2.16, R) >consensus AAACAUACGAUGGCUUUGGGAAAUAAAAAGUUAUUGCCAUUGUAGAGAUUAUUAUGGAAUGCGGUUAUGACUAA_________CGUAUUUACAUUUUUUUU__ .....(((((((((..(((...........)))..)))))))))............(((((((....................)))))))............. (-15.10 = -15.22 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:05:33 2011