| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,030,972 – 7,031,062 |
| Length | 90 |
| Max. P | 0.641113 |
| Location | 7,030,972 – 7,031,062 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 94.40 |
| Shannon entropy | 0.09405 |
| G+C content | 0.47740 |
| Mean single sequence MFE | -26.30 |
| Consensus MFE | -24.08 |
| Energy contribution | -23.08 |
| Covariance contribution | -1.00 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.641113 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7030972 90 + 27905053 AGCUCUCCACACGUGAGCCGAACCGUAUUGAUCUCGUUCUGGGGGUAUCUGUAUCGGUAUCGGUAUCUGUAUCUUGCAGAUACAUCUCGU .((((.........))))((((((((((.((((((.......))).))).))).)))).)))((((((((.....))))))))....... ( -27.60, z-score = -1.47, R) >droEre2.scaffold_4770 3156568 88 - 17746568 AGCUCUUUACACGUGAGCCGAAC-GUAUUGAUCUCGUUCUGGAGGUAUCUGUAUCGGCAUCUGC-UUAGUAUCUUGCAGAUACAUCUCGU ..........(((.(((((((((-(.....(((((......)))))...))).)))))((((((-..........))))))...)).))) ( -24.30, z-score = -1.11, R) >droYak2.chr3R 11063459 88 + 28832112 AGCUCUCCACACGUGAGCCGAAC-GUAUUGAUCUCGUUCUGGGGGUAUCUGUAUCGGUAUCUGC-UUAGUAUCUUGCAGAUACAUCUCGU .((((.........)))).((((-(.........))))).(((((((((((((..(((((....-...))))).))))))))).)))).. ( -26.20, z-score = -1.53, R) >droSec1.super_0 6192312 89 - 21120651 AGCUCUCCACACGUGAGCCGAAC-GUAUUGAUCUCGUUCUGGGGGUAUCUGUAUCGGUAUCGGUAUCUGUAUCUUGCAGAUACAUCUCGU .((((.........)))).((((-(.........))))).(((((((((((((..((((.(((...))))))).))))))))).)))).. ( -26.70, z-score = -1.33, R) >droSim1.chr3R 13178586 89 - 27517382 AGCUCUCCACACGUGAGCCGAAC-GUAUUGAUCUCGUUCUGGGGGUAUCUGUAUCGGUAUCGGUAUCUGUAUCUUGCAGAUACAUCUCGU .((((.........)))).((((-(.........))))).(((((((((((((..((((.(((...))))))).))))))))).)))).. ( -26.70, z-score = -1.33, R) >consensus AGCUCUCCACACGUGAGCCGAAC_GUAUUGAUCUCGUUCUGGGGGUAUCUGUAUCGGUAUCGGUAUCUGUAUCUUGCAGAUACAUCUCGU ....(((((.(((.((..(((......))).)).)))..)))))(((((((((..((((.(((...))))))).)))))))))....... (-24.08 = -23.08 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:05:26 2011