| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,029,954 – 7,030,046 |
| Length | 92 |
| Max. P | 0.500000 |
| Location | 7,029,954 – 7,030,046 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 67.45 |
| Shannon entropy | 0.60833 |
| G+C content | 0.33475 |
| Mean single sequence MFE | -17.40 |
| Consensus MFE | -6.76 |
| Energy contribution | -6.85 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 7029954 92 + 27905053 ----CCAAUCA--UGGGCUAUCCAUGGGCUUUAGUAUCGAUAUUAUUGGCUUAUCUAACGCAAAGCUGAAAACUUAAUGCCUUUCCAUUAAGUGAUAA- ----....(((--(((.....)))))).......((((.......(..((((..(....)..))))..)..((((((((......)))))))))))).- ( -20.90, z-score = -1.32, R) >droEre2.scaffold_4770 3155566 98 - 17746568 UCUCCCAAUCAAACUCAGUUUUAAUGGGCUUUAGUAUCAAUAUUGUUGGCUUAUCGAUUGGAAAGCUGAAAACUUAAUGGCUUUCCAUUAAGUGAUAA- .......(((....((((((((.(((((((.(((((....)))))..))))))).......))))))))..(((((((((....))))))))))))..- ( -23.20, z-score = -2.06, R) >droYak2.chr3R 11062423 98 + 28832112 UUUCCCAAUCAAACACAGUUUUCAUGGGCAUUAGUAUCGAUAUUGUUGUCUUAUCUAUCACAAAGCUAAAAACCUAAUGGCUUUCCAUUAAGUGAUAA- ...((((...((((...))))...))))..........((((....)))).....(((((((((((((.........))))))).......)))))).- ( -14.61, z-score = -0.55, R) >droSec1.super_0 6191282 91 - 21120651 ----CCAAUCA--UUG-UUAUCCAUGCGCUAUAGUAUCGAUAUUAUUAGCCUAUCUAACGUAAAGCUGACUACUUGAUGCCUUUCCAUUAAGUGAUAA- ----.......--...-.((((.((((......)))).))))...(((((....(....)....))))).(((((((((......)))))))))....- ( -17.10, z-score = -1.92, R) >droSim1.chr3R 13177552 91 - 27517382 ----CCAAUCA--UUG-UUAUCCAUGCGCUAUAGUAUCGAUAUUAUUAGCCCAUCUAACGUAAAGCUGACUACUUGAUGCCUUUCCAUUAAGUGAUAA- ----.......--...-.((((.((((......)))).))))...(((((....(....)....))))).(((((((((......)))))))))....- ( -17.10, z-score = -2.04, R) >droWil1.scaffold_181130 7781084 88 + 16660200 ----UCAGCUAAGCGUAAUCCUUUUAGGACUUUG-AUGGAUUUUA---AAUUAAAUAACGUCA---UUACAUUUUUUUUUUGAAACGUAAAGUAAUGAA ----((((((..((((..(((.....)))...((-(((...((((---...))))...)))))---..................))))..)))..))). ( -11.50, z-score = 0.12, R) >consensus ____CCAAUCA__CUGAGUAUCCAUGGGCUUUAGUAUCGAUAUUAUUGGCUUAUCUAACGUAAAGCUGAAAACUUAAUGCCUUUCCAUUAAGUGAUAA_ .......(((.............((((((..(((((....)))))...)))))).................((((((((......)))))))))))... ( -6.76 = -6.85 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:05:25 2011