| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,020,588 – 7,020,702 |
| Length | 114 |
| Max. P | 0.958620 |
| Location | 7,020,588 – 7,020,702 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.55 |
| Shannon entropy | 0.33764 |
| G+C content | 0.46243 |
| Mean single sequence MFE | -34.90 |
| Consensus MFE | -20.24 |
| Energy contribution | -22.42 |
| Covariance contribution | 2.19 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.66 |
| SVM RNA-class probability | 0.958620 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7020588 114 + 27905053 GCCAAGACUUGGACAACCUUGCUCAGGUCUGCAACUGUCGUCUGUCAUCCGAUUUUCCCGCACUUUUCCGAUCAAUGAAUGCGGCUAGUAGGAAGAUAGAUAGUUGCAAAUGUU------ ....(((((((..((....))..)))))))((((((...(((((((.(((.(((...(((((...(((........))))))))..))).))).))))))))))))).......------ ( -37.90, z-score = -3.16, R) >droSim1.chr3R 13167316 118 - 27517382 GCCAAGACUUGGACAACCGUGC--AGACCUGCAACUGCCGUCUGUCAUCCGAUUUUCCCGCACUUUUCCGAUCAAUAAGUGCGGCUGGAAGGAAGAUGGAUAGUUGCAAAUGGUCUUAAA .(((.....)))..........--(((((((((((((((((((..(.((((......((((((((...........)))))))).)))).)..)))))).))))))))...))))).... ( -41.80, z-score = -3.25, R) >droSec1.super_0 6181459 118 - 21120651 GCCAAGACUUGGACAACCUUGC--AGACCUGACACUGCCGUCUGUCAUCCGAUUUUCCCGCACUUUUCCGAUCAAUAAGUGCGGCUGGAAGAAAGAUGGAUAGUUGUAAAUGGUUUUAAA .(((.....)))..........--(((((..((((((((((((.((.((((......((((((((...........)))))))).)))).)).)))))).))).)))....))))).... ( -33.80, z-score = -1.91, R) >droYak2.chr3R 11053057 101 + 28832112 GCCAAGAUUUG-----CCUUCC----------AACUGCCUUCUGUCAUCCGAUUUCUUCGCACUUUUCCAAUCAAUAAGUGCGGCUGGAAGGAAAAU----AGUUGCAAAUGCCUUUCAA ((.(..((((.-----((((((----------(...(((...........((.....))((((((...........)))))))))))))))).))))----..).))............. ( -26.10, z-score = -2.15, R) >consensus GCCAAGACUUGGACAACCUUGC__AGACCUGCAACUGCCGUCUGUCAUCCGAUUUUCCCGCACUUUUCCGAUCAAUAAGUGCGGCUGGAAGGAAGAUGGAUAGUUGCAAAUGGUUUUAAA .............................(((((((...(((((((.(((...((..((((((((...........))))))))..))..))).))))))))))))))............ (-20.24 = -22.42 + 2.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:05:23 2011