| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,018,096 – 7,018,196 |
| Length | 100 |
| Max. P | 0.640390 |
| Location | 7,018,096 – 7,018,196 |
|---|---|
| Length | 100 |
| Sequences | 10 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 74.71 |
| Shannon entropy | 0.48755 |
| G+C content | 0.52284 |
| Mean single sequence MFE | -37.05 |
| Consensus MFE | -13.51 |
| Energy contribution | -13.65 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.640390 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7018096 100 + 27905053 UCCAUGCGGCAUUCAUUGUCG---ACAUCGGCGUUGGCGACGU---------AUA-----UGCCAAAGCAUUAACUCGGCAUUUGUUCCAAGCUGCUCUGAGGCAAGUCCGAGAUGG .((((..(((((.(.((((((---((......)))))))).).---------..)-----))))..........(((((.((((((..((........))..))))))))))))))) ( -35.00, z-score = -1.85, R) >dp4.chr2 28533495 99 + 30794189 UCCAUGCGGCAUUCAUUGUCG---ACAUCGGCAAUGGCAAUGGCGU----CGGCGACGUAUGCCAAAGCAUUAACUCGGCAUUUGUUUCAAGCAAGUCCGAGGUGG----------- .((((((.((...((((((((---....))))))))))..((((((----((....)).))))))..)).....(((((.((((((.....)))))))))))))))----------- ( -40.90, z-score = -3.92, R) >droPer1.super_6 3870503 99 + 6141320 UCCAUGCGGCAUUCAUUGUCG---ACAUCGGCAAUGGCAAUGGCGU----CGGCGACGUAUGCCAAAGCAUUAACUCGGUAUUUGUUUCAAGCAAGUCCGAGGUGG----------- .((((((.((...((((((((---....))))))))))..((((((----((....)).))))))..)).....(((((.((((((.....)))))))))))))))----------- ( -40.90, z-score = -4.23, R) >droAna3.scaffold_13340 11579674 100 - 23697760 UCCAUGCGGCAUUCAUUGUCG---ACAUCGGCGAUGGCGACGU---------AUA-----UGCCAAAGCAUUAACUCGGCAUUUGUUUCAAGCCGCUCUGAGGCAAGUCCGAGCUGG .(((.(((((((....(((((---.((((...)))).))))).---------..)-----))))...........((((.((((((((((........))))))))))))))))))) ( -36.70, z-score = -2.23, R) >droEre2.scaffold_4770 3145358 100 - 17746568 UCCAUGCGGCAUUCAUUGUCG---ACAUCGGCGAUGGCGACGU---------AUA-----UGCCAAAGCAUUAACUCGGCAUUUGUUUCAAGCUGCUCUGAGGCAAGUCCGAGAUGG .((((..(((((....(((((---.((((...)))).))))).---------..)-----))))..........(((((.((((((((((........))))))))))))))))))) ( -38.10, z-score = -2.91, R) >droYak2.chr3R 11050446 100 + 28832112 UCCAUGCGGCAUUCAUUGUCG---ACAUCGGCGAUGGCGACGU---------AUA-----UGCCAAAGCAUUAACUCGGCAUUUGUUGCAAGCUGCUCUGAGGCAAGUCCGAGAUGG .(((((((((...((((((((---....))))))))((((((.---------..(-----((((.............))))).))))))..))))).....((.....))...)))) ( -35.02, z-score = -1.50, R) >droSec1.super_0 6178997 105 - 21120651 UCCAUGCGGCAUUCAUUGUCG---ACAUCGGCGUUGGCGACGU---------AUACUAUAUGCCAAAGCAUUAACUCGGCAUUUGUUCCAAGCUGCUCUGAGGCAAGUCCGAGAUGG .((((..(((((.(.((((((---((......)))))))).).---------.......)))))..........(((((.((((((..((........))..))))))))))))))) ( -32.30, z-score = -0.99, R) >droSim1.chr3R 13164257 100 - 27517382 UCCAUGCGGCAUUCAUUGUCG---ACAUCGGCGUUGGCGACGU---------AUA-----UGCCAAAGCAUUAACUCGGCAUUUGUUCCAAGCUGCUCUGAGGCAAGUCCGAGAUGG .((((..(((((.(.((((((---((......)))))))).).---------..)-----))))..........(((((.((((((..((........))..))))))))))))))) ( -35.00, z-score = -1.85, R) >droMoj3.scaffold_6540 21556865 111 + 34148556 UCCAUGCGGCAUUCAUUGUCGCUGGAAUUUGUGACGUCGUUGUGUCGUUGUGGCGACGUCAGCCGAAGCAUUAACUCGACAUUUGUUUCAAGCUGCUGCGGCUCAGUGCCA------ ((((.((((((.....)))))))))).....(((((((((..(......)..)))))))))((((.((((.......(((....)))......)))).)))).........------ ( -42.72, z-score = -2.14, R) >droVir3.scaffold_13047 14376715 107 - 19223366 UCCAUGCGGCAUUCAUGGUCCCUCGUAUUGGUGACAACGUCGUCGC----UGGCUACGUCAGACGAAGCAUUAACUCGACAUUUGUUUCAAGCUGCUGCGGCGCCGGAGCG------ (((..((((((......(((...(((((..(((((......)))))----..).))))...)))((((((.............))))))....))))))(....))))...------ ( -33.82, z-score = 0.01, R) >consensus UCCAUGCGGCAUUCAUUGUCG___ACAUCGGCGAUGGCGACGU_________AUA_____UGCCAAAGCAUUAACUCGGCAUUUGUUUCAAGCUGCUCUGAGGCAAGUCCGAGAUGG ((...(((((...((.(((((.........((..((((.......................))))..)).......)))))..))......)))))...))................ (-13.51 = -13.65 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:05:23 2011