| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,011,553 – 7,011,655 |
| Length | 102 |
| Max. P | 0.712635 |
| Location | 7,011,553 – 7,011,655 |
|---|---|
| Length | 102 |
| Sequences | 11 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 85.96 |
| Shannon entropy | 0.29740 |
| G+C content | 0.36040 |
| Mean single sequence MFE | -22.82 |
| Consensus MFE | -15.38 |
| Energy contribution | -15.55 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.712635 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7011553 102 + 27905053 ------------AUCUGCUUGCUCCGGCGCUUUGUGUGUGUAAUUAAGUGAGGCAUAAAUAAAAUGCCUUUUUAGUAUUCAUCACAAUUUAUGCUAAGCUCUCAAAGCAUCAAG ------------...((((((((..((((..(((((.(((..((((((.(((((((.......)))))))))))))...))))))))....)))).))).....)))))..... ( -25.30, z-score = -2.00, R) >droSim1.chr3R 13157723 102 - 27517382 ------------AUCUGCUUGCUCCGGCGCUUUGUGUGUGUAAUUAAGUGAGGCAUAAAUAAAAUGCCUUUUUAGUAUUCAUCACAAUUUAUGCUAAGCUCUCAAAGCAUCAAG ------------...((((((((..((((..(((((.(((..((((((.(((((((.......)))))))))))))...))))))))....)))).))).....)))))..... ( -25.30, z-score = -2.00, R) >droSec1.super_0 6172462 102 - 21120651 ------------AUCUGCUUGCUCCGGCGCUUUGUGUGUGUAAUUAAGUGAGGCAUAAAUAAAAUGCCUUUUUAGUAUUCAUCACAAUUUAUGCUAAGCUCUCAAAGCAUCAAG ------------...((((((((..((((..(((((.(((..((((((.(((((((.......)))))))))))))...))))))))....)))).))).....)))))..... ( -25.30, z-score = -2.00, R) >droYak2.chr3R 11043653 102 + 28832112 ------------AUCUGCUUGCUCCGGCGCUUUGUGUGUGUAAUUAAGUGAGGCAUAAAUAAAAUGCCUUUUUAGUAUUCAUCACAAUUUAUGCUAAGCUCUCAAAGCAUCAAG ------------...((((((((..((((..(((((.(((..((((((.(((((((.......)))))))))))))...))))))))....)))).))).....)))))..... ( -25.30, z-score = -2.00, R) >droEre2.scaffold_4770 3138622 102 - 17746568 ------------AUCUGCUUGCUGCGGCGCUUUGUGUGUGUAAUUAAGUGAGGCAUAAAUAAAAUGCCUUUUUAGUAUUCAUCACAAUUUAUGCUAAGCUCUCAAAGCAUCAAG ------------...((((((((..((((..(((((.(((..((((((.(((((((.......)))))))))))))...))))))))....)))).))).....)))))..... ( -26.40, z-score = -1.65, R) >droAna3.scaffold_13340 11568463 99 - 23697760 ------------AUCUUUCUUUUCCG---CUUUGUGUGUGUAAUUAAGUGAGGCAUAAAUAAAAUGCCUUUUUAGUAUUCAUCACAAUUUAUGCUAAGCUCUCAAAGCAUCAAG ------------.............(---(((((.(.((..........(((((((.......))))))).(((((((............))))))))).).))))))...... ( -21.60, z-score = -2.91, R) >dp4.chr2 28525626 98 + 30794189 --------------CUCUCUGGCCCGU--CUUUGUGUGUGUAAUUAAGUGAGGCAUAAAUAAAAUGCCUUUUUAGUAUUCAUCACAAUUUAUGCUAAGCUCUCAAAGCAUCAAG --------------.....((((....--..(((((.(((..((((((.(((((((.......)))))))))))))...)))))))).....)))).(((.....)))...... ( -21.40, z-score = -2.18, R) >droPer1.super_6 3862478 98 + 6141320 --------------CUCUCUGGCCCGU--CUUUGUGUGUGUAAUUAAGUGAGGCAUAAAUAAAAUGCCUUUUUAGUAUUCAUCACAAUUUAUGCUAAGCUCUCAAAGCAUCAAG --------------.....((((....--..(((((.(((..((((((.(((((((.......)))))))))))))...)))))))).....)))).(((.....)))...... ( -21.40, z-score = -2.18, R) >droMoj3.scaffold_6540 21548540 114 + 34148556 GUGUGUGUGUGUUGGUGUUGAUGUUGAUGUUGUUGGUGUGUAAUUAAGUGAGGCAUAAAUAAAAUGCCUUUUUAGUAUUCAUCACAAUUUAUGCUAAGCUCUCAAAGCGUCAAG .....(((((.((((.(((...((....(((((.((((.(((.(((((.(((((((.......))))))))))))))).)))))))))....))..))).).))).))).)).. ( -25.50, z-score = -1.06, R) >droGri2.scaffold_14906 3890873 93 - 14172833 ---------------------CUUGGGUUUUUUGGGUGUGUAAUUAAGUGAGGCAUAAGUAAAAUGCCUUUUUAGUAUUCAUCACAAUUUAUGCUAAGCUCUCAAAGCGUCAAG ---------------------((((((((((..((((............(((((((.......))))))).(((((((............)))))))))))..))))).))))) ( -21.80, z-score = -1.89, R) >droVir3.scaffold_13047 14369213 82 - 19223366 --------------------------------UAUGUGUGUAAUUAAGUGAGGCAUAAAUAAAACGCCUUUUUAGUAUUCAUCACAAUUUAUGCUAAGCUCUCAAACCGUCAAG --------------------------------..((((((..((((((.(((((...........)))))))))))...)).))))............................ ( -11.70, z-score = -0.55, R) >consensus ____________AUCUGCUUGCUCCGGCGCUUUGUGUGUGUAAUUAAGUGAGGCAUAAAUAAAAUGCCUUUUUAGUAUUCAUCACAAUUUAUGCUAAGCUCUCAAAGCAUCAAG ..................................((((((..((((((.(((((((.......)))))))))))))...)).))))....(((((..........))))).... (-15.38 = -15.55 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:05:22 2011