| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,957,931 – 6,958,026 |
| Length | 95 |
| Max. P | 0.948873 |
| Location | 6,957,931 – 6,958,026 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 73.47 |
| Shannon entropy | 0.53042 |
| G+C content | 0.55726 |
| Mean single sequence MFE | -36.39 |
| Consensus MFE | -17.60 |
| Energy contribution | -19.47 |
| Covariance contribution | 1.87 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.948873 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6957931 95 + 27905053 GGUAAAGAACCGUGGUCUAAGUAGCCCGGAAAAGCACAGCGGUGGUAUUUACGGUGGUU---UUGCCGCCGACCAGU---GGGUCAGAUGGUCAG-UGGCCA (((......(((.(((.......)))))).....(((...(((((((...((....)).---.)))))))(((((..---........))))).)-))))). ( -32.00, z-score = -0.69, R) >droSim1.chr3R 13108887 95 - 27517382 GGUAAAGAACCGGGGUCUAAGUAGCCUGGAAAACCACCGCGGUGGUAUUUGCGGUGGUU---UUGCCGCCGACCAGU---GGGUCAGAUGGUCAG-UGGCCA .........(((((.(......).)))))(((((((((((((......)))))))))))---))(((((.(((((..---........))))).)-)))).. ( -42.70, z-score = -2.96, R) >droSec1.super_0 6120649 95 - 21120651 GGUAAAGAACCGGGGUCUAAGUAGCCCGGAAAACCACCGCGGUGGUAUUUGCGGUGGUU---UUGCCGCCGACCAGU---GGGUCAGAUGGUCAG-UGGCCA .........(((((.(......).)))))(((((((((((((......)))))))))))---))(((((.(((((..---........))))).)-)))).. ( -44.90, z-score = -3.38, R) >droYak2.chr3R 10989821 95 + 28832112 GGUAAAGAGCCGUGGUCUAAGUAGUCCGGAAAACCACUGCGGUGGUAUUGGCGGUGGUU---UUGCCGCCGACCAGU---GGGUCAGAUGGUCAG-UGGCCA (((.....))).(((.((....)).))).(((((((((((.(......).)))))))))---))(((((.(((((..---........))))).)-)))).. ( -37.60, z-score = -1.93, R) >droEre2.scaffold_4770 3088045 95 - 17746568 GGUAAAGAACCGGAGUCUAAGUAGCCCGGAAAACCACCGCGGUGGUAUUUGCGGUGGUU---UUGCCGCCGACCAGU---GGGUCAGAUGGUCAG-UGGCCA .........((((.((.......))))))(((((((((((((......)))))))))))---))(((((.(((((..---........))))).)-)))).. ( -42.30, z-score = -3.19, R) >droAna3.scaffold_13340 11520019 93 - 23697760 GGUAAAGAGCUCGUG-CUAAGUAGCCCAGUGG--CAUU----UGGUAUUCGCGGCGGUUCGCUUUCCACCAGUGGGUC--AGGUCAGAUGGUCAGAUGCCCA ........((..(((-((((((.(((....))--))))----))))))..))(((((..((((.......))))..))--.(..(....)..)....))).. ( -28.20, z-score = 0.05, R) >droMoj3.scaffold_6540 21498222 94 + 34148556 GGUAAACG--CGAGACCUGAGUAGCCGUGGCAAUAACA-----AACAUUUACUUGGCUUUAUCAGGAGCCGAGUAGCAGUAGCUAUAACAGGCAGUUACUU- (((((.(.--...).((((.(((((..(.((.......-----......(((((((((((....))))))))))))).)..)))))..))))...))))).- ( -27.01, z-score = -1.70, R) >consensus GGUAAAGAACCGGGGUCUAAGUAGCCCGGAAAACCACCGCGGUGGUAUUUGCGGUGGUU___UUGCCGCCGACCAGU___GGGUCAGAUGGUCAG_UGGCCA .(((((...(((.((.((....)))))))...(((((....))))).)))))((((((......))))))((((.......))))....((((....)))). (-17.60 = -19.47 + 1.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:05:20 2011