| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,949,683 – 6,949,773 |
| Length | 90 |
| Max. P | 0.834928 |
| Location | 6,949,683 – 6,949,773 |
|---|---|
| Length | 90 |
| Sequences | 8 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 74.95 |
| Shannon entropy | 0.49668 |
| G+C content | 0.32224 |
| Mean single sequence MFE | -14.38 |
| Consensus MFE | -8.23 |
| Energy contribution | -8.51 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.834928 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6949683 90 - 27905053 CAGGUUAAUAUGCACACCGAAUUGCAUAUUCAACUUUUCGGAUAUAUAUGUAUAAACGUAUGUAAUA-AAGUGUAUCUCAAACAAUGCUCU ...(((...((((((.(((((..(.........)..))))).(((((((((....)))))))))...-..))))))....)))........ ( -18.70, z-score = -2.18, R) >droSim1.chr3R 13100048 84 + 27517382 CAGGUUAAUAUGCACACCGAAUUGCAUAUUCAACUUUUCGGAUAUAUAU------ACGUAUGUAAUA-AAGUGUAUCUCAAACAAUGCUCU .(((((((((((((........)))))))).)))))...((((((((.(------((....)))...-..))))))))............. ( -14.00, z-score = -0.93, R) >droSec1.super_8804 372 84 + 1549 CAGGUUAAUAUGCACACCGAAUGGCAUAUUCAACUUUUCCGAUAUAUAU------ACGUAUGUAAUA-AAGUGUAUCUCAAACAAUGCUCU .((((((((((((.((.....))))))))).)))))....(((((((.(------((....)))...-..))))))).............. ( -12.90, z-score = -0.45, R) >droYak2.chr3R 10980594 90 - 28832112 CAGGUUAAUAUGCACACCGAAUUGCAUAUUCAACUUUUCGGAUAUAUAUACAUACGUAUAUGUAAUA-AAGUAUAUCUCAAACAAUGCCCU .(((((((((((((........)))))))).)))))...((.(((((((((....)))))))))...-..((((..........)))))). ( -18.20, z-score = -2.49, R) >droEre2.scaffold_4770 3079902 84 + 17746568 CAGGUUAAUAUGCACACCGAAUUGCAUAUUCAACUUUUCGGAUAU------AUACGUAUACGUAAUA-AAGUAUAUCUCAAACAAUGCCCU .(((((((((((((........)))))))).)))))...((((((------(((((....)))....-..))))))))............. ( -15.90, z-score = -2.16, R) >droAna3.scaffold_13340 11514057 70 + 23697760 CGGGUUAAUAUGCACACCGAAUUGCAUAUUCAACUUUACGG----------------GAAUGUAAUA-AAAUAUAUCUGAAACAAUG---- .(((((((((((((........)))))))).)))))..(((----------------(.((((....-..)))).))))........---- ( -13.20, z-score = -2.15, R) >droMoj3.scaffold_6540 21491550 81 - 34148556 CGGGUUAAUAUGCACACUAAAUUGCAGGCCCAACUUUUCGACUGU----------UGUUAUAAAAUAUACGUAUUUCGUUUGUGAUACAAU .(((((....((((........)))))))))...........(((----------.(((((((.....(((.....))))))))))))).. ( -13.60, z-score = -0.09, R) >droGri2.scaffold_14906 3820366 75 + 14172833 CGGGUUAUUAUGCACACUAAAUUGCAUAUUCAACUUUUCGACUGU---------------UGCAAUA-AAAUAUAUUUCAUACAACACAAU .(((((..((((((........))))))...)))))......(((---------------((.....-..............))))).... ( -8.51, z-score = -0.87, R) >consensus CAGGUUAAUAUGCACACCGAAUUGCAUAUUCAACUUUUCGGAUAU__________ACGUAUGUAAUA_AAGUAUAUCUCAAACAAUGCUCU .(((((((((((((........)))))))).)))))....................................................... ( -8.23 = -8.51 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:05:19 2011