| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,923,959 – 6,924,060 |
| Length | 101 |
| Max. P | 0.591295 |
| Location | 6,923,959 – 6,924,060 |
|---|---|
| Length | 101 |
| Sequences | 7 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 67.90 |
| Shannon entropy | 0.61143 |
| G+C content | 0.41204 |
| Mean single sequence MFE | -25.09 |
| Consensus MFE | -10.10 |
| Energy contribution | -11.24 |
| Covariance contribution | 1.15 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.591295 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6923959 101 - 27905053 AAUCAAUAGGAGAAAUUCCAUAACAGAUACUCAAGCACACAUA----UAUGGAGGAGAAGGCCAAGUC---UGAUUCUGGCCUAGGUCAUGUGCGAGUAUUUGCGUUU------ ........((((...))))....(((((((((..(((((....----.....((((..((((...)))---)..))))(((....))).)))))))))))))).....------ ( -27.10, z-score = -1.75, R) >droAna3.scaffold_13340 11484740 98 + 23697760 ------AAGCAGAUAUAUAAUAGUAGGCAC--AAGCACAUACAU--UUGGAUGUGUACAUUUCGGGCCAAGUGGUUCUGGCUAAGGUCGAGUGCGAAUAUUUGCGUUU------ ------..((((((((((....))).((((--..((((((.(..--..).)))))).....(((((((....))))).(((....)))))))))...)))))))....------ ( -25.70, z-score = -1.34, R) >droEre2.scaffold_4770 3054249 106 + 17746568 AAUCAAUAGGAGAAAUGCCAUAACAGAUACUCAAGCACAUACA----UAGAGCAG-GAAGGCCAAGUC---UGAUUCUGGCCUAGGUCAUGUGCCAGUACGAGUAUUUGCGUUU ........(((....).))....(((((((((..((((((((.----(((..(((-((((((...)))---)..)))))..))).)).))))))......)))))))))..... ( -26.70, z-score = -1.07, R) >droYak2.chr3R 10954710 105 - 28832112 AAUCAAUAGGAGAAAUUCCAUAACAGAUACUCAAGCACAUAUAUAUGUAGAGGAGAGAAGGCCAAGUC---UGAUUCUGGCCUAGGUCAUGUGCCAGUAUUUGCGUUU------ ........((((...))))....((((((((...((((((..........((((....((((...)))---)..))))(((....))))))))).)))))))).....------ ( -23.70, z-score = -0.59, R) >droSec1.super_0 6080726 101 + 21120651 AAUCAAUAGGAGAAAUUCCAUAACAGAUACUCAAGCACACAUA----UAUGAAGGAGAAGGCCAAGUC---UGAUUCUGGCCUAGGUCAUGUGCGAGUAUUUGCGUUU------ ........((((...))))....(((((((((..(((((....----.....((((..((((...)))---)..))))(((....))).)))))))))))))).....------ ( -27.00, z-score = -2.02, R) >droSim1.chr3R 13074304 101 + 27517382 AAUCAAUAGGAGAAAUUCCAUAACAGAUACUCAAGCACACAUA----UAUGAAGGAGAAGGCCAAGUC---UGAUUCUGGCCUAGGUCAUGUGCGAGUAUUUGCGUUU------ ........((((...))))....(((((((((..(((((....----.....((((..((((...)))---)..))))(((....))).)))))))))))))).....------ ( -27.00, z-score = -2.02, R) >droMoj3.scaffold_6540 21456502 94 - 34148556 AACCUGUGGCAAAAAUAUCACGUAGAACAC-CAAUGAUGACUG---CUUAUAAAGUCAACUCGGGGU----CAACUCUAG---AAUUUAUGCGU---UCUAUGCGCUA------ .....((((........))))(((((((..-......(((((.---.......))))).((.(((..----...))).))---.........))---)))))......------ ( -18.40, z-score = -0.43, R) >consensus AAUCAAUAGGAGAAAUUCCAUAACAGAUACUCAAGCACACAUA____UAGAAAAGAGAAGGCCAAGUC___UGAUUCUGGCCUAGGUCAUGUGCGAGUAUUUGCGUUU______ .......................((((((((...((((((..........).......((((((((((....)))).))))))......))))).))))))))........... (-10.10 = -11.24 + 1.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:05:17 2011