| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,905,671 – 6,905,769 |
| Length | 98 |
| Max. P | 0.944317 |
| Location | 6,905,671 – 6,905,769 |
|---|---|
| Length | 98 |
| Sequences | 8 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 65.80 |
| Shannon entropy | 0.62612 |
| G+C content | 0.36913 |
| Mean single sequence MFE | -22.95 |
| Consensus MFE | -9.66 |
| Energy contribution | -7.67 |
| Covariance contribution | -1.98 |
| Combinations/Pair | 1.59 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.50 |
| SVM RNA-class probability | 0.944317 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6905671 98 - 27905053 --GCUUCACUUUUUUAU-UGCACUUUUCUAAAGCAAUCCAAGAGUUUCGGAAUAUCUUAA--AAAUAUUUCUCUUAUUACACUUUGCA----GCAGGUGCUACUAGU------- --((...((((((..((-(((...........)))))..))))))...(((((((.....--..)))))))..............))(----((....)))......------- ( -13.80, z-score = -0.09, R) >droAna3.scaffold_13340 11466290 100 + 23697760 GAACUUCAGUGCUUUAUGUUCUUCUCUAUAGAGGAGAGCAGCAUGGUUGGAAUAUCUAAAUGGAAUAUUCCCUUUAUUACACUUUAUG----ACAGGUGGUGGU---------- .((((...(((((....(((((((((....))))))))))))))))))(((((((((....)).)))))))........(((((....----..))))).....---------- ( -27.50, z-score = -1.67, R) >droEre2.scaffold_4770 3034959 105 + 17746568 --GCUUUACCUUUUUAU-UGCACUUUUCUAAAGCAAUGCCAGAGUUUUGGAAUAUCUUUA--AAAUAUUCCUCUUAUUACACUUUGCA----GCAGGUGCCACUAGUGCACUUC --...............-((((((........(((.(((((((((...(((((((.....--..))))))).........))))))..----)))..)))....)))))).... ( -20.70, z-score = -1.40, R) >droYak2.chr3R 10935605 105 - 28832112 --GCUUUACUUUUUUAU-UGCACUUUUCUAGAGCAAUGCAAGAGUUUUGGAAUAUCUUAA--AAAUAUUCCUCUUAUUACACUUUGCA----GCAGGUGGCACUAGUGCACUUC --(((..((((((.(((-(((.((.....)).)))))).))))))...(((((((.....--..)))))))................)----))(((((.((....))))))). ( -23.20, z-score = -1.38, R) >droSec1.super_0 6062246 105 + 21120651 --GCUUCGCUUUUUUAU-UGCACUUUUCUAAAGCAAUCCAAGAGUUUCGGAAUAUCUUAA--AAAUAUUUCUCUUAUUUCACUUUGCA----GCAGGUGCUACUAGUGCACUUC --(((.(((((((..((-(((...........)))))..))))))...(((((((.....--..)))))))..............).)----))((((((.......)))))). ( -19.80, z-score = -1.39, R) >droSim1.chr3R 13055095 105 + 27517382 --GCUUCGCUUUUUUAU-UGCACUUUUCUAAAGCAAUCCAAGAGUUUCGGAAUAUCUUAA--AAAUAUUUCUCUUAUUACACUUUGCA----GCAGGUGCUACUAGUGCACUUU --(((.(((((((..((-(((...........)))))..))))))...(((((((.....--..)))))))..............).)----))((((((.......)))))). ( -19.80, z-score = -1.23, R) >droPer1.super_6 3721164 92 - 6141320 --GCCUUAGUUUUUUAUGGCCAUC------GAGGCCCUGAGAAUAUUUAAGAUAUUUC-------UUUUAUUACUGCUACACUUUGUGUGCAGCAGGUGCCUCUCGU------- --(((.(((....))).)))....------(((((((((..((((...((((....))-------)).)))).((((.((((...)))))))))))).)))))....------- ( -29.90, z-score = -3.93, R) >dp4.chr2 28383535 92 - 30794189 --GCCUUAGUUUUUGAUGGCCAUC------GAGGCCCUGAGAAUAUUUAAGAUAUUUC-------UUUUAUUACUGCUACACUUUGUGUGCAGCAGGUGCCUCUCGU------- --(((............)))....------(((((((((..((((...((((....))-------)).)))).((((.((((...)))))))))))).)))))....------- ( -28.90, z-score = -3.22, R) >consensus __GCUUCACUUUUUUAU_UGCACUUUUCUAAAGCAAUCCAAGAGUUUUGGAAUAUCUUAA__AAAUAUUCCUCUUAUUACACUUUGCA____GCAGGUGCCACUAGU_______ ........(((((.....(((...........)))....)))))....(((((((.........)))))))........(((((.((.....)))))))............... ( -9.66 = -7.67 + -1.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:05:11 2011