| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,890,280 – 6,890,375 |
| Length | 95 |
| Max. P | 0.874046 |
| Location | 6,890,280 – 6,890,375 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 77.15 |
| Shannon entropy | 0.41444 |
| G+C content | 0.45997 |
| Mean single sequence MFE | -27.43 |
| Consensus MFE | -15.94 |
| Energy contribution | -16.31 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.874046 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6890280 95 + 27905053 ---------------GUGCCUCGG-CACACAUGUCGAAUACGCAAUUGUCUUGAGUGGCCACUCGAGGAAAUAGUAGCAACUAAAAGUGAAGUGGCGCAAAGAGAAAGAAA ---------------(((((((((-((....))))))...(((.....((((((((....))))))))...((((....))))...)))....)))))............. ( -27.70, z-score = -2.07, R) >droSim1.chr3R 13045276 95 - 27517382 ---------------GUGCCUCGG-CACACAUGUCGAAUACGCAAUUGUCUUGAGUGGCCACUCGAGGAAAUAGUAGCAACUAAAAGUGAAGUGGCGCAAAGAGAAAGAAA ---------------(((((((((-((....))))))...(((.....((((((((....))))))))...((((....))))...)))....)))))............. ( -27.70, z-score = -2.07, R) >droSec1.super_0 6052525 95 - 21120651 ---------------GUGCCUCGG-CACACAUGUCGAAUACGCAAUUGUCUUGAGUGGCCACUCGAGGAAAUAGUAGAAACUAAAAGUGAAGUGGCGCAAAGAGAAAGAAA ---------------(((((((((-((....))))))...(((.....((((((((....))))))))...((((....))))...)))....)))))............. ( -27.70, z-score = -2.50, R) >droYak2.chr3R 10925627 95 + 28832112 ---------------GUGCCUCGG-CACACAUGUCGAAUACGCAAUCGUCUUGAGUGGCCACUCGAGGAAAUAGUAGCGACUAAAAGUGAAGUGGCACAAAGAGAAAGAAA ---------------(((((.(..-(((....((((..(((.......((((((((....)))))))).....))).)))).....)))..).)))))............. ( -30.00, z-score = -2.80, R) >droEre2.scaffold_4770 3025061 95 - 17746568 ---------------GUGCCUGGG-CACACAUGUCGAAUACGCAAUCGUCUUGAGUGGCCACUCGAGGAAAUAGUAGCGACUAAAAGUGAAGUGGCGCAAAGAGAAAGAAA ---------------(((((....-(((....((((..(((.......((((((((....)))))))).....))).)))).....)))....)))))............. ( -28.30, z-score = -1.95, R) >droAna3.scaffold_13340 11456828 96 - 23697760 ---------------GUGCUCCGGGCACACAUGUCGAAUGCGCAAUUGUCCUGAGUGGCCACUUGGGAAAAUUGUGGCAACUGAACUGAAGAGAGCCAAGACAAGGAGUAA ---------------.(((((((......).((((......((((((.(((..(((....)))..))).))))))(((..((.......))...)))..)))).)))))). ( -31.80, z-score = -1.69, R) >droWil1.scaffold_181130 7617708 102 + 16660200 UUGAAAAGGAAAUGUGUUCCAUUGGCACACAUGUCGUAUACGCAAUUGUCUUAAGUG-UCACUUAAAGAAC------AGAGUACAAGUGGAAAACUAAAGAGAAGGAGA-- ........((.((((((.((...)).)))))).))..........((.((((.(((.-((((((.......------.......))))))...))).)))).)).....-- ( -18.84, z-score = -0.09, R) >consensus _______________GUGCCUCGG_CACACAUGUCGAAUACGCAAUUGUCUUGAGUGGCCACUCGAGGAAAUAGUAGCAACUAAAAGUGAAGUGGCGCAAAGAGAAAGAAA ...............(((((.(...(((...((.((....))))....((((((((....))))))))..................)))..).)))))............. (-15.94 = -16.31 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:05:06 2011