| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,888,014 – 6,888,104 |
| Length | 90 |
| Max. P | 0.956908 |
| Location | 6,888,014 – 6,888,104 |
|---|---|
| Length | 90 |
| Sequences | 8 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 80.05 |
| Shannon entropy | 0.37722 |
| G+C content | 0.53815 |
| Mean single sequence MFE | -29.67 |
| Consensus MFE | -21.41 |
| Energy contribution | -20.98 |
| Covariance contribution | -0.42 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.64 |
| SVM RNA-class probability | 0.956908 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6888014 90 + 27905053 --------GCCUCGAAGGCGUGUCCGUUGCAAGGAAUUCGAACAUGUUGCAUAUGCAAUGCGGACGCUACUUUCGGCCUCUCCCA-AUCCUUCGUGGUG --------(((.((((((.((((((((((((.(.(((........))).)...))))..)))))))).......((......)).-..)))))).))). ( -31.00, z-score = -2.18, R) >droSim1.chr3R 13042955 90 - 27517382 --------GCCUCGAAGGCGUGUCCGUUGCAAGGAAUUCGAACAUGUUGCAUAUGCAAUGCGGACGCUACUUUCGGCCUCUCCCA-AUCCUUCGUGGUG --------(((.((((((.((((((((((((.(.(((........))).)...))))..)))))))).......((......)).-..)))))).))). ( -31.00, z-score = -2.18, R) >droSec1.super_0 6050213 90 - 21120651 --------GCCUCGAAGGCGUGUCCGUUGCAAGGAAUUCGAACAUGUUGCAUAUGCAAUGCGGACGCUACUUUCGGCCUCUCCCA-AUCCUUCGUGGUG --------(((.((((((.((((((((((((.(.(((........))).)...))))..)))))))).......((......)).-..)))))).))). ( -31.00, z-score = -2.18, R) >droYak2.chr3R 10923207 91 + 28832112 --------GCCUCGAAGGCGUGUCCGUUGCAAGGAAUUCGAACAUGUUGCAUAUGCAAUGCGGACACCACUUUCGGUCUCUCCCCCAUCCUUCGUGGUG --------(((.((((((.((((((((((((.(.(((........))).)...))))..)))))))).......((........))..)))))).))). ( -31.10, z-score = -2.40, R) >droEre2.scaffold_4770 3022692 90 - 17746568 --------GCCUCGAAGGCGUGUCCGUUGCAAGGAGUUCGAACAUGUUGCAUAUGCAAUGCGGACACUACUUUCGGUCUCUCCCA-AUCCUUCGUGGUU --------(((.((((((.(((((((((((((.(.((....)).).)))))........)))))))).......((......)).-..)))))).))). ( -31.20, z-score = -2.52, R) >droAna3.scaffold_13340 11454426 73 - 23697760 --------GGCUCGAAGGCGUGUCCGUUGCACGGCAAGCGAACAUGUUGCAUAUGCAAUGCGGACACUACUUUCGUCUUUC------------------ --------....((((((.((((((((((((..((((.(......)))))...))))..))))))))..))))))......------------------ ( -26.10, z-score = -2.14, R) >dp4.chr2 28367545 91 + 30794189 GCGAAUGCGGCUUGAAGGCGUGUCCGUUGCAAGCAGU-CGAACAUGUUGCAUAUGCAAUGCGGACACUACUUUCG-CUCCUCUCUGCUCUCUC------ (((...(.((..((((((.((((((((((((.((((.-(......)))))...))))..))))))))..))))))-..)).)..)))......------ ( -28.30, z-score = -0.99, R) >droPer1.super_6 3705329 91 + 6141320 GCGAAUGCGGCUUGAAGGCGUGUCCGUUGCAAGCAGU-CGAACAUGUUGCAUAUGCAAUGCGGACACUACUUUCG-CUCCUCUCUGUUCUCUC------ (((((....(((....)))((((((((((((.((((.-(......)))))...))))..))))))))....))))-)................------ ( -27.70, z-score = -0.97, R) >consensus ________GCCUCGAAGGCGUGUCCGUUGCAAGGAAUUCGAACAUGUUGCAUAUGCAAUGCGGACACUACUUUCGGCCUCUCCCA_AUCCUUCGUGGUG ............((((((.((((((((..................(((((....)))))))))))))..))))))........................ (-21.41 = -20.98 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:05:05 2011