| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,882,314 – 6,882,424 |
| Length | 110 |
| Max. P | 0.563593 |
| Location | 6,882,314 – 6,882,424 |
|---|---|
| Length | 110 |
| Sequences | 9 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 73.01 |
| Shannon entropy | 0.57889 |
| G+C content | 0.45337 |
| Mean single sequence MFE | -28.18 |
| Consensus MFE | -14.93 |
| Energy contribution | -14.44 |
| Covariance contribution | -0.49 |
| Combinations/Pair | 1.45 |
| Mean z-score | -0.81 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.563593 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6882314 110 - 27905053 AUCACUUUUCUUCUUUUUUGUGCUACC-CUGCUGCCAAACUGUAAUUAAAAUUAAUUGGAGGCUUUGGCUGUGGUCAGGCCGAACCGGGCUUUACACAGCACCUUAAUUAA ...................(((((...-.....(((((.((.((((((....)))))).))...))))).(((...(((((......)))))..))))))))......... ( -27.20, z-score = -1.02, R) >droSim1.chr3R 13037365 110 + 27517382 AUCACUUUUCUUCUUUUUUGCGCUGCC-CUGCUGCCAAACUGUAAUUAAAAUUAAUUGGAGGCUUUGGCUGUGGUCAGGCCGAACCGGGCUUCACACAGCACCUUAAUUAA .....................((((..-(..(.(((((.((.((((((....)))))).))...))))).)..)..(((((......)))))....))))........... ( -26.10, z-score = -0.03, R) >droSec1.super_0 6044559 110 + 21120651 AUCACUUUUCUCCUUUUUUGCGCUGCC-CUGCUGCCAAACUGUAAUUAAAAUUAAUUGGAGGCUUUGGCUGUGGACAGGCCGAUCCGGGCUUCACACAGCACCUUAAUUAA ........(((((...((((.((.((.-..)).))))))....(((((....)))))))))).....((((((...(((((......)))))..))))))........... ( -27.00, z-score = -0.37, R) >droYak2.chr3R 10917545 107 - 28832112 AUCACUUUUCUUCCUUU---CGCUGCC-CUGCUGCCAAACUGUAAUUAAAAUUAAUUGGAGGCUUUGGCUGUGGUCAGGCAGAGCCGGGCUCCACACAGCACCUUAAUUAA .................---.((((..-.((..(((....(.((((((....)))))).)(((((((.(((....))).))))))).)))..))..))))........... ( -29.80, z-score = -0.84, R) >droEre2.scaffold_4770 3017219 107 + 17746568 AUCACUUUUCUUCUUUU---CGCUGCC-CUGCUGCCAAACUGUAAUUAAAAUUAAUUGGAGGCUUUGGCUGUGGUCAGGCAGAGCCGGUCUCCGCACAGCACCUUAAUUAA .................---.((((..-.(((.(((....(.((((((....)))))).)(((((((.(((....))).))))))))))....)))))))........... ( -28.20, z-score = -0.67, R) >droAna3.scaffold_13340 11449075 109 + 23697760 CGUAUUUCCUUUCUUAUUUUUGCUGCC-UUGCUGCCAAACUGUAAUUAAAAUUAAUUGGAGGCUUUGGCUGUGGUCAGGCUGAACUGGGCU-CACACAGCACCUUAAUUAA ....................(((((..-.....(((((.((.((((((....)))))).))...)))))(((((((((......)).))).-))))))))).......... ( -24.60, z-score = 0.11, R) >dp4.chr2 28358757 106 - 30794189 ----GAUCAUCUCUGGCCGCUGCCACAGCCGCUGCCGAACUGUAAUUAAAAUUAAUUGGAGGCUUUGGUCAGGGCCCAGGACAG-AGGACAGAGGACUGUACCUUAAUUAA ----.....(((..((((.((((((.((((....((((....((((....)))).)))).)))).))).)))))))..)))..(-(((((((....)))).))))...... ( -36.00, z-score = -1.95, R) >droPer1.super_6 3690017 106 - 6141320 ----GAUCAUCUCUGGCCGCUGCCACUGCCACUGCCGAACUGUAAUUAAAAUUAAUUGGAGGCUUUGGUCAGGGCACAGAACAG-AGGACAGAGGACAGUACCUUAAUUAA ----.....((((((..(..((((.((((((..(((......((((....))))......)))..))).)))))))..)..)))-)))...((((......))))...... ( -32.90, z-score = -2.07, R) >droGri2.scaffold_14906 3753261 84 + 14172833 ------------------------GCC-CCAUU-CGAAACUGUAAUUAAAAUUAAUUGGAGGCUUUUCUUGUGGUCAAGCUGAGCGGCGACCGCUGUGGCG-CUUAAUUAA ------------------------((.-((((.-.((((((.((((((....)))))).))...))))..((((((..(((....))))))))).)))).)-)........ ( -21.80, z-score = -0.51, R) >consensus AUCACUUUUCUUCUUUUUU_CGCUGCC_CUGCUGCCAAACUGUAAUUAAAAUUAAUUGGAGGCUUUGGCUGUGGUCAGGCAGAGCCGGGCUCCACACAGCACCUUAAUUAA ............................((((.(((((.((.((((((....)))))).))...))))).))))............(((((......))).))........ (-14.93 = -14.44 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:05:03 2011