| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,880,596 – 6,880,714 |
| Length | 118 |
| Max. P | 0.525348 |
| Location | 6,880,596 – 6,880,714 |
|---|---|
| Length | 118 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 75.28 |
| Shannon entropy | 0.40637 |
| G+C content | 0.31272 |
| Mean single sequence MFE | -26.37 |
| Consensus MFE | -12.98 |
| Energy contribution | -14.72 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.525348 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6880596 118 - 27905053 AAAAUAGGGGCUAAUGGGUAGGAGGUAUUUAUUUAUUAUUAGCUUUCGAAGUAAUUGGAAAGUAUCUCUUAACGUUUAACGUUUGCAGAUGCAUCUGUAAGCCUUUGUUCAUUUUUAU ..((((((((((((((..((((((((...............((((((.((....)).)))))))))))))).)))).......((((((....))))))))))))))))......... ( -31.46, z-score = -3.12, R) >droEre2.scaffold_4770 3015467 107 + 17746568 UAAAUAUGAGCAAAUGGGUUAUAGG--UUAAUAAACAAAUAGGGUUCGAAGUAAUUGGAAAUUACUUAUAAA---CUCAAGUGUCCAGCUUUAUCUACUAGCUUCUAUUUGU------ ((((((.((((...(((((...(((--((.....(((....(((((..(((((((.....)))))))...))---)))...)))..))))).)))))...)))).)))))).------ ( -21.00, z-score = -1.31, R) >droSec1.super_0 6042853 118 + 21120651 AAAAUAGGAGCUAAUGGAUAGGAGGUAUUUAUUUAUUAUUAGCUUUCGAAGUAAUCUGAAAAUAUCUCUAAAGGUUUAACGUUUGCAGAUGCAUCUUUAAGCCGUUGCUCAUUCAUAU .......((((.........((((((((((.(..((((((.........))))))..).))))))))))...(((((((.(..(((....))).).)))))))...))))........ ( -26.50, z-score = -1.41, R) >droSim1.chr3R 13035660 117 + 27517382 AAAAUAGGAGCUAAUGGAUAGGAGGUAUUUAUUUAUUAUUAGCUUUCGAAGUAAUCUGAAAAUAUCUCU-AAGGUUUAACGUUUGCAGAUGCAUCUUUAAGCCGUUGCUCAUUCAUUU .......((((.........((((((((((.(..((((((.........))))))..).))))))))))-..(((((((.(..(((....))).).)))))))...))))........ ( -26.50, z-score = -1.41, R) >consensus AAAAUAGGAGCUAAUGGAUAGGAGGUAUUUAUUUAUUAUUAGCUUUCGAAGUAAUCGGAAAAUAUCUCUAAAGGUUUAACGUUUGCAGAUGCAUCUUUAAGCCGUUGCUCAUUCAUAU .......((((.(((((.((((((((((((.(..((((((.........))))))..).))))))))))))............(((....)))........)))))))))........ (-12.98 = -14.72 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:05:03 2011