| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,878,101 – 6,878,200 |
| Length | 99 |
| Max. P | 0.500000 |
| Location | 6,878,101 – 6,878,200 |
|---|---|
| Length | 99 |
| Sequences | 11 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 86.46 |
| Shannon entropy | 0.29185 |
| G+C content | 0.44325 |
| Mean single sequence MFE | -30.53 |
| Consensus MFE | -21.24 |
| Energy contribution | -21.65 |
| Covariance contribution | 0.41 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 6878101 99 - 27905053 ----------UGCGUUGCUUUCUUUUGCAAAAUUGCUUGUUUACUUCAAAGCAAGCAAUUCCUGGAGCAUCAGCUGCGUCAUGGCGCAAAACAAUGCUGUCAACUUGGG ----------.((((((.....((((((..((((((((((((......))))))))))))((((..(((.....)))..)).)).))))))))))))............ ( -29.70, z-score = -1.29, R) >droSim1.chr3R 13033157 99 + 27517382 ----------UGCGUUGCUUUCUUUUGCAAAAUUGCUUGUUUACUUCAAAGCAAGCAAUUCCUGGAGCAUCAGCUGCGUCAUGGCGCAAAACAAUGCUGUCAACUUGGG ----------.((((((.....((((((..((((((((((((......))))))))))))((((..(((.....)))..)).)).))))))))))))............ ( -29.70, z-score = -1.29, R) >droSec1.super_0 6040351 99 + 21120651 ----------UGCGUUGCUUUCUUUUGCAAAAUUGCUUGUUUACUUCAAAGCAAGCAAUUCCUGGAGCAUCAGCUGCCUCAUGGCGCAAAACAAUGCUGUCAACUUGGG ----------.((((((.....((((((..((((((((((((......)))))))))))).....(((....)))(((....)))))))))))))))............ ( -30.40, z-score = -1.69, R) >droYak2.chr3R 10913384 99 - 28832112 ----------UGCGUUGCUUUCUUUUGCAAAAUUGCUUGUUUACUUCAAAGCAAGCAAUUCCUGGAGCAUCAGCUGCGUCAUGGCGCAAAACAAUGCUGUCAACUUGGG ----------.((((((.....((((((..((((((((((((......))))))))))))((((..(((.....)))..)).)).))))))))))))............ ( -29.70, z-score = -1.29, R) >droEre2.scaffold_4770 3013003 99 + 17746568 ----------UGCGUUGCUUUCUUUUGCAAAAUUGCUUGUUUACUUCAAAGCAAGCAAUUCCUGGAGCAUCAGCUGCGUCAUGGCGCAAAACAAUGCUGUCAACUUGGG ----------.((((((.....((((((..((((((((((((......))))))))))))((((..(((.....)))..)).)).))))))))))))............ ( -29.70, z-score = -1.29, R) >droAna3.scaffold_13340 11445113 109 + 23697760 ACCGGCAGAAGGAGUUGCUUUCUUUCGCAAAAUUGCUUGUUUACUUCAAAGCAAGCAAUUCCUGUAGCAUCAGCUGCGUCAUGGCGCAAAACAAUGCUGUCAACUUGGG .(((((.(((((((.....)))))))....((((((((((((......))))))))))))...(((((....)))))))).(((((((......))).))))....)). ( -36.40, z-score = -2.42, R) >dp4.chr2 28348355 107 - 30794189 -UGUGUGGUGUUGGCUGCUUUCUUUUUCAAAAUUGCUUGUUUACUUCAAAGCAAGCAAUUCCUGUAGCAUCAGCUGCGUCAUGGCGCAAAACAAUGCUGUC-ACUUGGG -.((((((((((((((((............((((((((((((......))))))))))))...)))))......(((((....)))))...)))))))).)-))..... ( -34.06, z-score = -2.15, R) >droPer1.super_6 3685169 107 - 6141320 -UGUGUGGUGUUGGCUGCUUUCUUUUUCAAAAUUGCUUGUUUACUUCAAAGCAAGCAAUUCCUGUAGCAUCAGCUGCGUCAUGGCGCAAAACAAUGCUGUC-ACUUGGG -.((((((((((((((((............((((((((((((......))))))))))))...)))))......(((((....)))))...)))))))).)-))..... ( -34.06, z-score = -2.15, R) >droWil1.scaffold_181130 7606450 93 - 16660200 ---------------UGC-UCCUUUUGCAAAAUUGCUUGUUUACUUCAAAGCAAGCAAUUCGUGUAGCAUCAGCUGCAUCAUGACGCAAAACAAUGCCUGUCACUUAGG ---------------...-...((((((..((((((((((((......)))))))))))).(((((((....)))))))......)))))).....((((.....)))) ( -28.60, z-score = -3.06, R) >droVir3.scaffold_13047 14207938 97 + 19223366 ---------UGCUGUUGC--UGCUUUACAAAAUUGCUUGUUUACUUCAAAGCGUGCAUUUCUUGUAGCAUCAGCUGCGUCAGGGCGCAAAACAAUGCUGUC-ACUUGGG ---------.((((.(((--(((..........(((.(((((......))))).)))......)))))).))))(((((....))))).............-....... ( -26.39, z-score = 0.06, R) >droMoj3.scaffold_6540 21411763 97 - 34148556 ---------UGAUGUUGC--UGCUUUACAAAAUUGCUUGUUUACUUCAAAGCGUGCAUUUCUUGUAGCAUCAGCUGCGUCAGGGCGCAAAACAAUGCUGUC-ACUUGGG ---------((((((.((--((..((((((((.(((.(((((......))))).))).)).))))))...)))).)))))).((((((......))).)))-....... ( -27.10, z-score = -0.44, R) >consensus __________UGCGUUGCUUUCUUUUGCAAAAUUGCUUGUUUACUUCAAAGCAAGCAAUUCCUGUAGCAUCAGCUGCGUCAUGGCGCAAAACAAUGCUGUCAACUUGGG ..............................((((((((((((......)))))))))))).....(((((....(((((....))))).....)))))........... (-21.24 = -21.65 + 0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:05:02 2011