Locus 9470

Sequence ID dm3.chr3R
Location 6,872,058 – 6,872,165
Length 107
Max. P 0.885214
window12987

overview

Window 7

Location 6,872,058 – 6,872,165
Length 107
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 82.32
Shannon entropy 0.26569
G+C content 0.48812
Mean single sequence MFE -32.10
Consensus MFE -25.00
Energy contribution -25.00
Covariance contribution 0.00
Combinations/Pair 1.15
Mean z-score -1.91
Structure conservation index 0.78
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.07
SVM RNA-class probability 0.885214
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 6872058 107 - 27905053
CGCUGGUCGUCGAGAGAUGUCCCGAUGGCGUUUGUGUUGCUGAUUUUUGUUUAUAUUCGCCAUCAACU---GGAUGGAAAUUCCGGGUGGGGUUCGGUUCGGUUCGGUUG
....((.((((....)))).)).(((((((..((((..((........)).))))..)))))))((((---((((.(((...(((..(...)..)))))).)))))))). ( -39.40, z-score =  -2.71, R)
>droSim1.chr3R 13027062 104 + 27517382
CGCUGGUCGUCGAGAGAUGUCCCGAUGGCGUUUGUGUUGCUGAUUUUUGUUUAUAUUCGCCAUCAACUGGAGGAUGGAAAUUCCGGGUGGGGUUCGGUUGUGUU------
.(((((.((((....))))(((((((((((..((((..((........)).))))..)))))))..((((((........))))))..)))).)))))......------ ( -36.30, z-score =  -2.32, R)
>droEre2.scaffold_4770 3006902 90 + 17746568
CGCUGGUCGUUGAAAGAUGUCCCGAUGGCGUUUGUGUUGCUGAUUUUUGUUUAUAUUCGCCAUCAACU---GGAUGGAAAUUCCGGGUGGGGU-----------------
(((.((.((((....)))).)).(((((((..((((..((........)).))))..)))))))..((---(((.......))))))))....----------------- ( -30.00, z-score =  -2.21, R)
>droAna3.scaffold_13340 11439597 89 + 23697760
CGCUGGUUGUCGAAAGAUGUCCCGAUGGCGUUUGUGUUGCUGAUUUUUGUUUAUAUUCACCAUCAACU---GGGCGGAAAUUCGAAGAGUGG------------------
((((.....(((((...(((((.(((((.(..((((..((........)).))))..).)))))....---)))))....)))))..)))).------------------ ( -22.70, z-score =  -0.41, R)
>consensus
CGCUGGUCGUCGAAAGAUGUCCCGAUGGCGUUUGUGUUGCUGAUUUUUGUUUAUAUUCGCCAUCAACU___GGAUGGAAAUUCCGGGUGGGGU_________________
((((((.((((....)))).)).(((((((..((((..((........)).))))..))))))).......((((....))))..))))..................... (-25.00 = -25.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:05:01 2011