| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,871,219 – 6,871,310 |
| Length | 91 |
| Max. P | 0.567145 |
| Location | 6,871,219 – 6,871,310 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 68.48 |
| Shannon entropy | 0.67854 |
| G+C content | 0.48627 |
| Mean single sequence MFE | -18.82 |
| Consensus MFE | -9.59 |
| Energy contribution | -9.69 |
| Covariance contribution | 0.10 |
| Combinations/Pair | 1.09 |
| Mean z-score | -0.46 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.567145 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6871219 91 + 27905053 GGAGAUGUACGACGAGAAGAAUCCCGAUGUUGUGCCCUACAAUGAGGGUAAGUUACCGGUUCC--AGAAA---CACUUUGCUUAGAUCCCCAUCCU (((...((((((((.(........)..)))))))).......((.((((((((.....(((..--...))---).....)))))...)))))))). ( -17.80, z-score = 0.37, R) >droSim1.chr3R 13026226 91 - 27517382 GGAGAUGUACGACGAGAAGAAUCCCGAUGUUGUGCCCUACAAUGAGGGUAAGUUACCGGUUCC--AGAAA---CCCUUUGCUUAGAUCCCCAUCCU (((...((((((((.(........)..)))))))).......((.((((((((....((((..--...))---))....)))))...)))))))). ( -20.20, z-score = -0.58, R) >droSec1.super_0 6033485 91 - 21120651 GGAGAUGUACGACGAGAAGAAUCCCGAUGUUGUGCCCUACAAUGAGGGUAAGUUACCGGUUCC--AGAAA---CCCUUUGCUUAGAUCCCCAUCCU (((...((((((((.(........)..)))))))).......((.((((((((....((((..--...))---))....)))))...)))))))). ( -20.20, z-score = -0.58, R) >droYak2.chr3R 10906220 92 + 28832112 GGAGAUGUACGACGAGAAGAAUCCCGAUGUGGUGCCCUACAAUGAGGGUAAGUUACCGGUUCC-CAAAAA---CCCUUUGCUUAGAUCCCCAGCCU ((.(((.((.(....((((.((((((.(((((....))))).)).))))........((((..-....))---)))))).).)).))).))..... ( -19.10, z-score = 0.24, R) >droEre2.scaffold_4770 3006057 96 - 17746568 GGAGAUGUACGACGAGAAGAAUCCCGAUGUGGUGCCCUACAAUGAGGGUAAGUUACCGGUUCCACAAAAAACCCCCUUUGCUUAGAUACCCAACCU ((.(((..............)))))..((.((((((((......))))(((((....((((........))))......)))))..)))))).... ( -16.44, z-score = 1.02, R) >droAna3.scaffold_13340 11438837 91 - 23697760 GGAGAUGUACGACGAGAAGAAUCCCGACGUUGUGCCCUACAAUGAGGGUAAGUCCCACAGCAGUGUCCCCUUGUUUUCUACGACGUAUCCU----- (((.((((.((...((((((.....(((....((((((......)))))).))).(((....)))........)))))).)))))).))).----- ( -24.50, z-score = -1.28, R) >dp4.chr2 28340546 75 + 30794189 GGAGAUGUACGACGAGAAGAAUCCCGAUGUUGUGCCCUACAAUGAGGGUAAGUUC------CUUCAAGAUGAAUGUGUCGU--------------- ........((((((......(((..((.....((((((......)))))).....------..))..))).....))))))--------------- ( -16.50, z-score = -0.58, R) >droPer1.super_6 3677493 75 + 6141320 GGAGAUGUACGACGAGAAGAAUCCCGAUGUUGUGCCCUACAAUGAGGGUAAGUUC------CUUCAAGAUGAAUGUGUCGU--------------- ........((((((......(((..((.....((((((......)))))).....------..))..))).....))))))--------------- ( -16.50, z-score = -0.58, R) >droWil1.scaffold_181130 7599302 81 + 16660200 GGAGAUGUACGACGAGAAGAAUCCCGAUGUUGUGCCCUACAAUGAGGGUAAGUCCAACAAGCUUUAAGAUGAAUGUUGUGU--------------- ((.(((..............)))))(((....((((((......)))))).)))(((((..(........)..)))))...--------------- ( -16.24, z-score = -0.70, R) >droMoj3.scaffold_6540 21405710 77 + 34148556 GGAGAUGUACGACGAGAAGAAUCCCGAUGUCGUGCCCUACAACGAGGGUAAGUGCAAUUGCAAUCCCGGCCAAUCUU------------------- .(((((((((((((.(........)..))))))))..........(((....(((....)))..))).....)))))------------------- ( -20.00, z-score = -0.79, R) >droVir3.scaffold_13047 14202348 77 - 19223366 GGAGAUGUACGACGAAAAGAAUCCAGAUGUCGUACCCUACAACGAGGGUAAGUGCAAUUGCAAUUCUGUCUAAGCUC------------------- .(((...((.(((....(((((.(((.(((..((((((......))))))...))).)))..))))))))))..)))------------------- ( -17.70, z-score = -0.91, R) >droGri2.scaffold_14906 3741996 83 - 14172833 GGAGAUGUACGACGAGAAGAAUCCCGAUGUCGUCCCCUACAAUGAGGGUAAGUGCAAUUGCAUUCCAUUCUCCACCAUAGCUC------------- (((((((((((((((.(.(.....)..).)))))((((......))))...)))))............)))))..........------------- ( -20.70, z-score = -1.13, R) >consensus GGAGAUGUACGACGAGAAGAAUCCCGAUGUUGUGCCCUACAAUGAGGGUAAGUUCCAGGUUCCUCAAAAA_AACCCUUUGCU______________ ((.(((..............))))).......((((((......)))))).............................................. ( -9.59 = -9.69 + 0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:05:00 2011