| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,866,818 – 6,866,926 |
| Length | 108 |
| Max. P | 0.775897 |
| Location | 6,866,818 – 6,866,926 |
|---|---|
| Length | 108 |
| Sequences | 7 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 82.66 |
| Shannon entropy | 0.33406 |
| G+C content | 0.45095 |
| Mean single sequence MFE | -29.74 |
| Consensus MFE | -20.22 |
| Energy contribution | -22.94 |
| Covariance contribution | 2.72 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.775897 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6866818 108 - 27905053 CAUUAAGUAUGCAGUUAUUAUGCGCUUUUUGUUGCACUUCUUGCAGCAGCCGCC-UCGUUAUGCAACGCUUUGAUUUGCGUUGCCUUUUCGCAGGAUCCGCAUGCUUUU ....((((((((................((((((((.....))))))))...((-(((....(((((((........))))))).....)).)))....)))))))).. ( -34.80, z-score = -2.61, R) >droSim1.chr3R 13021797 108 + 27517382 CAUUAAGUAUGCAGUUAUUAUGCGCUUUUUGUUGCACUUCUUGCAGCAGCCGCC-UCGUUAUGCAACGCUUUGAUUUGCGUUGCCUUUUCGCAGGAUCCGCAUGCUUUU ....((((((((................((((((((.....))))))))...((-(((....(((((((........))))))).....)).)))....)))))))).. ( -34.80, z-score = -2.61, R) >droSec1.super_0 6029177 108 + 21120651 CAUUAAGUAUGCAGUUAUAAUGCGCUUUUUGUUGCACUUCUUGCAGCAGCCGCC-UCGUUAUGCAACGCUUUGAUUUGCGUUGCCUUUUCGCAGGAUCCGCAUGCUUUU ....((((((((................((((((((.....))))))))...((-(((....(((((((........))))))).....)).)))....)))))))).. ( -34.80, z-score = -2.49, R) >droYak2.chr3R 10901634 108 - 28832112 CAUUAAGUAUGCAGUUAUUAUGCGCUUUUUGUUGCACUUCUUGCAGCAGCCGCC-UCGUUAUGCAACGCUUUGAUUUGCGUUGCCUUUUCGCAGGAUCCGCAUGCUUUU ....((((((((................((((((((.....))))))))...((-(((....(((((((........))))))).....)).)))....)))))))).. ( -34.80, z-score = -2.61, R) >droEre2.scaffold_4770 3001467 108 + 17746568 CAUUAAGUAUGCAGUUAUUAUGCGCUUUUUGUUACACUUCUUGCAGCAGCCGCC-UCGUUAUGCAACGCUUUGAUUUGCGUUGCCUUUUCGCAGGAUCCGCAUGCUUUU ....((((((((.((......))...............((((((.((....)).-.......(((((((........)))))))......))))))...)))))))).. ( -30.30, z-score = -1.63, R) >droAna3.scaffold_13340 11434360 86 + 23697760 CAUUAAGUAUGCAGUUAUUAUGCACUUUUUGUUGCACU---UGCAGCAGCCGCC-UCGUUAUGCAGCGCUUUGAUUUGCGUUGCCUUUUC------------------- .........((((.......))))....(((((((...---.))))))).....-.......(((((((........)))))))......------------------- ( -22.40, z-score = -0.89, R) >droWil1.scaffold_181130 7594930 90 - 16660200 CAUUAAGUAUGCAGUUAUUAUGCGCUCUUUGUUGCACUUUCAGUAGCUGGCGUUGCCUUCACUUGCCGCCUCGUUAUGAGUUGUUUCCUC------------------- ....(((..((((.......))))..))).(..(((..((((.((((.((((..((........))))))..)))))))).)))..)...------------------- ( -16.30, z-score = 0.71, R) >consensus CAUUAAGUAUGCAGUUAUUAUGCGCUUUUUGUUGCACUUCUUGCAGCAGCCGCC_UCGUUAUGCAACGCUUUGAUUUGCGUUGCCUUUUCGCAGGAUCCGCAUGCUUUU ....((((((((.........(((....((((((((.....)))))))).))).........(((((((........)))))))...............)))))))).. (-20.22 = -22.94 + 2.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:04:59 2011