| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,853,256 – 6,853,347 |
| Length | 91 |
| Max. P | 0.820093 |
| Location | 6,853,256 – 6,853,347 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 59.23 |
| Shannon entropy | 0.69193 |
| G+C content | 0.28162 |
| Mean single sequence MFE | -14.40 |
| Consensus MFE | -6.44 |
| Energy contribution | -5.24 |
| Covariance contribution | -1.20 |
| Combinations/Pair | 1.83 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.820093 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6853256 91 - 27905053 AUCUAAUCUAAUUAAAAUCGAUUGUUUCAUA-UAAUAUCUAGGGUUC-----------------------UAUUUUUUUCCGUGCAUAUGAAAUUGUACGUCUGU--CAAAAUUUUG ..................((((.((((((((-(........(((...-----------------------........)))....))))))))).)).)).....--.......... ( -7.60, z-score = 0.63, R) >droSim1.chr3R 13010056 103 + 27517382 UUCUAUUCUAACUAAAAUCGAUUGCUUUAUAUUACUAUCUAGGAAUAUAAACAA------------UCAGUAUUUUUUUCCGUGCAUCUGAAAUUGUACGUCUGU--CAAAAUUUUA ...................(((((.((((((((.((....)).)))))))))))------------))............((((((........)))))).....--.......... ( -16.90, z-score = -2.55, R) >droSec1.super_0 6015689 102 + 21120651 AUCUGAUCUAAUU-AAAUCGAUUGCUUUAUAUUAAUAUGUAGGAAUCUAAACAA------------UCAGUAUUUUUUUCCGUGCAUCUGAAAUUGUACGUCUGU--CAAAGUUUUU ...((((......-.....((((.((.((((....)))).)).)))).......------------..............((((((........))))))...))--))........ ( -13.50, z-score = -0.13, R) >droYak2.chr3R 10887981 110 - 28832112 ----AAUUCAUUUUAAAUCCAUUCCUUUACA-UAAUAUGUUGUUAUCUAAACAAAAAGUAUAUUUCUGAAUAUUUUUUCCCGUGCAUCUGAAAUUGUAUGUCUGU--CAAAGUUUCG ----....................(((((((-..((((.(((((.....)))))...))))...................((((((........))))))..)))--.))))..... ( -10.40, z-score = -0.57, R) >droWil1.scaffold_181130 7582563 93 - 16660200 ------------UCGUUUCCACUACACUGCA-CAACAAAUUAGGAUUUCUAGA-----------UUUCACAGGGCUUCUAUGAGUAAGUAAAAUUACUUGCUUGUUGUAUAGUGUUA ------------...........((((((.(-((((....(((((.((((.(.-----------.....))))).))))).(((((((((....)))))))))))))).)))))).. ( -23.60, z-score = -2.46, R) >consensus _UCUAAUCUAAUUAAAAUCGAUUGCUUUAUA_UAAUAUCUAGGAAUCUAAACAA____________UCAGUAUUUUUUUCCGUGCAUCUGAAAUUGUACGUCUGU__CAAAGUUUUA ................................................................................((((((........))))))................. ( -6.44 = -5.24 + -1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:04:58 2011