| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,846,160 – 6,846,334 |
| Length | 174 |
| Max. P | 0.944196 |
| Location | 6,846,160 – 6,846,255 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 92.60 |
| Shannon entropy | 0.12710 |
| G+C content | 0.43776 |
| Mean single sequence MFE | -21.52 |
| Consensus MFE | -20.80 |
| Energy contribution | -21.40 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.50 |
| SVM RNA-class probability | 0.944196 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6846160 95 + 27905053 UACAGCGCAUAGGAAAAACGGCUAACAGAACAGAAAUUCCUGUGCGUAACUUAUCCCACCUACAUUCUAUGGCCUCUAACCUGGCACAUAUUGUA ....(((((((((((......((........))...))))))))))).............((((...(((((((........))).)))).)))) ( -24.20, z-score = -2.62, R) >droSim1.chr3R 13001219 95 - 27517382 UACAGCGCAUAGGAAAAACGGCUAACAGAACAGAAAUUCCUGUGCGUAACUUAUCCCACCUACAUUCUAUGGCCUCUGACCUGGCACAUAUUGUA ....(((((((((((......((........))...))))))))))).............((((...(((((((........))).)))).)))) ( -24.20, z-score = -2.31, R) >droSec1.super_0 6008785 95 - 21120651 UACAGCGCAUAGGAAAAACGGCUAACAGAACAGAAAUUCCUGUGCGUAACUUAUCCCACCUACAUUCUAUGGCCUCUGACCUGGCACAUAUUGUA ....(((((((((((......((........))...))))))))))).............((((...(((((((........))).)))).)))) ( -24.20, z-score = -2.31, R) >droYak2.chr3R 10880896 91 + 28832112 UACAGCGAAUAGGAAAAAACGGUCA----ACAGAAAUUCCUGUGCGUAACUUAUCCCACCUACAUUCUAUGGCCUCUGACCUGGCACAUAUUGUA ....(((.(((((((.....(....----.).....))))))).))).............((((...(((((((........))).)))).)))) ( -17.90, z-score = -0.71, R) >droEre2.scaffold_4770 2980391 90 - 17746568 AACAGCGAAUAGGAAAAACGGCUAA-----CAGAAAUUCCUGUGCGUAACUUACCCCACCUACAUACAAUGGCCUCUGACCUGGCACAUAUUGUA ....(((.(((((((...(......-----..)...))))))).))).................((((((((((........)))...))))))) ( -17.10, z-score = -0.52, R) >consensus UACAGCGCAUAGGAAAAACGGCUAACAGAACAGAAAUUCCUGUGCGUAACUUAUCCCACCUACAUUCUAUGGCCUCUGACCUGGCACAUAUUGUA ....(((((((((((.....................))))))))))).............((((...(((((((........))).)))).)))) (-20.80 = -21.40 + 0.60)
| Location | 6,846,255 – 6,846,334 |
|---|---|
| Length | 79 |
| Sequences | 5 |
| Columns | 80 |
| Reading direction | reverse |
| Mean pairwise identity | 81.27 |
| Shannon entropy | 0.31830 |
| G+C content | 0.27994 |
| Mean single sequence MFE | -9.77 |
| Consensus MFE | -5.46 |
| Energy contribution | -5.50 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.703751 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6846255 79 - 27905053 GCUACUAUUAUAAAAAA-GCACAAAAAUCGAAAAGGAAAAAAAGAAACAAAAUGCAUAUAGUUCGAUAUGAUGUUGGCCG ((((.(((((((.....-.........(((((.............................)))))))))))).)))).. ( -6.88, z-score = 0.20, R) >droSim1.chr3R 13001314 63 + 27517382 GCUACUAUUAUAUAAAA--CACAAAAAUC-------UAAAAAAA--------UUCAUAUAGUUCGAUAUGAUGUUGGCCG ((((.((((((((..((--(.........-------........--------........)))..)))))))).)))).. ( -9.31, z-score = -2.52, R) >droSec1.super_0 6008880 64 + 21120651 GCUACUAUUAUAUAAAA--CACAAAAAUC-------CAAAAAAAA-------UUCAUAUAGUUCGAUAUGAUGUUGGCCG ((((.((((((((..((--(.........-------.........-------........)))..)))))))).)))).. ( -9.27, z-score = -2.41, R) >droYak2.chr3R 10880987 73 - 28832112 GCUACUAUUAUAUAAAACACACAAAAAUC-------AAAAAAAGAACUAUAUUACAUAUAGUUCGAUGUGAUGUUGGCCG ((((.((((((((................-------.......(((((((((...))))))))).)))))))).)))).. ( -14.75, z-score = -3.79, R) >droEre2.scaffold_4770 2980481 70 + 17746568 GCUACUAUUAUAUGAAA--CACAAAAUC--------AAAAAAAAAAAAAAAAUACAUAUAGUUCGAUAUGAUGUUGGCCG ((((.((((((((..((--(........--------........................)))..)))))))).)))).. ( -8.65, z-score = -2.29, R) >consensus GCUACUAUUAUAUAAAA__CACAAAAAUC_______AAAAAAAAAA__A_A_UACAUAUAGUUCGAUAUGAUGUUGGCCG ((((.((((((((....................................................)))))))).)))).. ( -5.46 = -5.50 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:04:57 2011