| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,844,860 – 6,844,932 |
| Length | 72 |
| Max. P | 0.983795 |
| Location | 6,844,860 – 6,844,932 |
|---|---|
| Length | 72 |
| Sequences | 5 |
| Columns | 72 |
| Reading direction | forward |
| Mean pairwise identity | 88.69 |
| Shannon entropy | 0.18883 |
| G+C content | 0.32708 |
| Mean single sequence MFE | -13.68 |
| Consensus MFE | -11.17 |
| Energy contribution | -11.17 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.75 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.15 |
| SVM RNA-class probability | 0.983795 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6844860 72 + 27905053 CUGCACAUUUGAUUAAUUUUUUUUUUUUACAGUGUAUUAUUUGCUCUCCUUUUGAGUGAGUGACCAGUGACC .(((((...(((..((......))..)))..)))))(((((..(((.......)))..)))))......... ( -12.20, z-score = -1.67, R) >droEre2.scaffold_4770 2979127 64 - 17746568 CUGCACAUAUGAUUUAUUAUAUUUUUA-GCAGUGUAUUAUUUGCUCUCCUUUUGAGUGAGUGACC------- ((((..((((((....)))))).....-))))....(((((..(((.......)))..)))))..------- ( -13.40, z-score = -2.29, R) >droYak2.chr3R 10879587 63 + 28832112 CUGCACAUAUGAUUUAUUAU-UUUUUA-GCAGUGUAUUAUUUGCUCUCCUUUUGAGUGAGUGACC------- .(((((...(((........-...)))-...)))))(((((..(((.......)))..)))))..------- ( -12.30, z-score = -1.97, R) >droSec1.super_0 6007465 64 - 21120651 CUGCACAUUUGAUAAAUUAUUUUUUUA-ACUGUGUAUUAUUUGCUCUCCUUUUGAGUGAGUGACC------- .((((((.((((.(((....))).)))-).))))))(((((..(((.......)))..)))))..------- ( -16.50, z-score = -4.92, R) >droSim1.chr3R 12999907 64 - 27517382 CUGCACAUUUGAUGAAUUAUUUUUUUA-ACAGUGUAUUAUUUGCUCUCCUUUUGAGUGAGUGACC------- .(((((..((((.(((....))).)))-)..)))))(((((..(((.......)))..)))))..------- ( -14.00, z-score = -2.92, R) >consensus CUGCACAUUUGAUUAAUUAUUUUUUUA_ACAGUGUAUUAUUUGCUCUCCUUUUGAGUGAGUGACC_______ .(((((.........................)))))(((((..(((.......)))..)))))......... (-11.17 = -11.17 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:04:56 2011