| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,838,092 – 6,838,148 |
| Length | 56 |
| Max. P | 0.972235 |
| Location | 6,838,092 – 6,838,148 |
|---|---|
| Length | 56 |
| Sequences | 3 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 97.60 |
| Shannon entropy | 0.03280 |
| G+C content | 0.58431 |
| Mean single sequence MFE | -11.70 |
| Consensus MFE | -11.70 |
| Energy contribution | -11.70 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.86 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.585642 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6838092 56 + 27905053 UUUCCCCCCACAGCACCGCGCAUCGCGAGUGUCAACAGCGCAGCGCUCUAUAAUUG .................((((..(((..((....)).)))..)))).......... ( -11.70, z-score = -0.99, R) >droSim1.chr3R 12993184 55 - 27517382 -UUUCCCCCACAGCACCGCGCAUCGCGAGUGUCAACAGCGCAGCGCUCUAUAAUUG -................((((..(((..((....)).)))..)))).......... ( -11.70, z-score = -0.80, R) >droSec1.super_0 6000746 55 - 21120651 -UUUCCCCCACAGCACCGCGCAUCGCGAGUGUCAACAGCGCAGCGCUCUAUAAUUG -................((((..(((..((....)).)))..)))).......... ( -11.70, z-score = -0.80, R) >consensus _UUUCCCCCACAGCACCGCGCAUCGCGAGUGUCAACAGCGCAGCGCUCUAUAAUUG .................((((..(((..((....)).)))..)))).......... (-11.70 = -11.70 + 0.00)
| Location | 6,838,092 – 6,838,148 |
|---|---|
| Length | 56 |
| Sequences | 3 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 97.60 |
| Shannon entropy | 0.03280 |
| G+C content | 0.58431 |
| Mean single sequence MFE | -21.30 |
| Consensus MFE | -21.30 |
| Energy contribution | -21.30 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.98 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.87 |
| SVM RNA-class probability | 0.972235 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6838092 56 - 27905053 CAAUUAUAGAGCGCUGCGCUGUUGACACUCGCGAUGCGCGGUGCUGUGGGGGGAAA ......((.((((((((((.((((.(....))))))))))))))).))........ ( -21.30, z-score = -1.92, R) >droSim1.chr3R 12993184 55 + 27517382 CAAUUAUAGAGCGCUGCGCUGUUGACACUCGCGAUGCGCGGUGCUGUGGGGGAAA- ......((.((((((((((.((((.(....))))))))))))))).)).......- ( -21.30, z-score = -2.01, R) >droSec1.super_0 6000746 55 + 21120651 CAAUUAUAGAGCGCUGCGCUGUUGACACUCGCGAUGCGCGGUGCUGUGGGGGAAA- ......((.((((((((((.((((.(....))))))))))))))).)).......- ( -21.30, z-score = -2.01, R) >consensus CAAUUAUAGAGCGCUGCGCUGUUGACACUCGCGAUGCGCGGUGCUGUGGGGGAAA_ ......((.((((((((((.((((.(....))))))))))))))).))........ (-21.30 = -21.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:04:52 2011