| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,835,329 – 6,835,438 |
| Length | 109 |
| Max. P | 0.892507 |
| Location | 6,835,329 – 6,835,438 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 77.92 |
| Shannon entropy | 0.40633 |
| G+C content | 0.43106 |
| Mean single sequence MFE | -27.82 |
| Consensus MFE | -17.68 |
| Energy contribution | -20.76 |
| Covariance contribution | 3.08 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.892507 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6835329 109 - 27905053 UUGAUAAGGUGGUCGGAGGGCCAAAAGCAGACAAUUAGCUGGACAGCCAAACAUUUUGAAAUAGAUAGGGCCAAGUAAUUGGCCUUAUCAAUUUCUGUGGUGAGUGAAA .......(((.(((((....)).....(((........)))))).)))...((((..(((((.(((((((((((....))))))))))).)))))...))))....... ( -36.40, z-score = -3.61, R) >droEre2.scaffold_4770 2969683 91 + 17746568 UUGAUAAGGUGGUCGGAGGGCUAAAAGCAGACAAUUAGCUGGAC---------------AAUAGAUAGAGCCAAGUAAAUGUGGUUGUCAAUUUCUGUUAGUGAGA--- (((......(((((....)))))....)))...((((((.(((.---------------(((.((((..((((........)))))))).))))))))))))....--- ( -14.70, z-score = 0.94, R) >droYak2.chr3R 10869662 109 - 28832112 UUGAUAAGGUGGUCGGUGGGCCAAAAGCAGACAAUUAGCUGGACAUGCAAACAUUUUGAAAUAGAUAGGGCCAACUAAUUGGGCUUGUCAAUUUCUGUGGCGGGUGAAA .........(((((....)))))....(((........)))..(((.(...(((...(((((.((((((.((((....)))).)))))).))))).)))..).)))... ( -28.30, z-score = -0.72, R) >droSec1.super_0 5997993 84 + 21120651 UUGAUAAGGUGGUCGGCGGGCCAAAAGCAGACAAUUAGCUGGACAGCCAAACAUUUUGAAAUAGAUAGGGCCAAGUAAUUGGCC------------------------- ....(((((((...(((...(((...((.........)))))...)))...)))))))..........((((((....))))))------------------------- ( -23.30, z-score = -1.79, R) >droSim1.chr3R 12990419 109 + 27517382 UUGAUAAGGUGGUCGGAGGGCCAAAAGCAGACAAUUAGCUGGACAGCCAAACAUUUUGAAAUAGAUAGGGCCAAGUAAUUGGCCUUAUCAAUUUCUGUGGUGAGUGAAA .......(((.(((((....)).....(((........)))))).)))...((((..(((((.(((((((((((....))))))))))).)))))...))))....... ( -36.40, z-score = -3.61, R) >consensus UUGAUAAGGUGGUCGGAGGGCCAAAAGCAGACAAUUAGCUGGACAGCCAAACAUUUUGAAAUAGAUAGGGCCAAGUAAUUGGCCUUAUCAAUUUCUGUGGUGAGUGAAA .........(((((....)))))....(((........)))................(((((.(((((((((((....))))))))))).))))).............. (-17.68 = -20.76 + 3.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:04:48 2011