| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,948,800 – 6,948,916 |
| Length | 116 |
| Max. P | 0.963507 |
| Location | 6,948,800 – 6,948,916 |
|---|---|
| Length | 116 |
| Sequences | 7 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 63.80 |
| Shannon entropy | 0.73792 |
| G+C content | 0.50378 |
| Mean single sequence MFE | -38.89 |
| Consensus MFE | -12.39 |
| Energy contribution | -13.26 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.72 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.72 |
| SVM RNA-class probability | 0.963507 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6948800 116 + 23011544 CUGGAGAACGAACCGCGACGCUGGUUCAGAUGCAUUGCAUCGUUCACCGGCGAACCGGUGAUUC-CGAAUUCAUCGGUUCAU-CGCGGUACAGUGGACUGAAUCUAUCUGGUAUCAGA ((((.......(((((((.((((((...(((((...)))))....))))))((((((((((...-.....)))))))))).)-)))))).(((((((.....)))).)))...)))). ( -51.00, z-score = -4.30, R) >droSim1.chr2L 6744302 116 + 22036055 CUGGAGAAGGAACCGCGACGCUGGUUCAGAUGCAUUGCUUCGUUCACCGGCGAACCGGUAAUUC-CGAAUUCAUCGGUUCAU-CGCGGUACAGUGGACUGAAUCUAUCUGGUAUCAGA (((((((.((((((((((.((((((...((.((...)).))....))))))(((((((((((..-...))).)))))))).)-)))))).(((....)))..))).)))....)))). ( -41.30, z-score = -1.94, R) >droSec1.super_3 2481559 116 + 7220098 CUGGAGAAGGAACCGCGACGCUGGUACAGAUGCAUUGCUUCGUUCACCGGCGAACCGGUGAUUC-CGAAUUCAUCGGUUCAU-CGCGGUACAGUGGACUGAAUCUAUCUGGUAUCAGA (((((((.((((((((((.((((((...((.((...)).))....))))))((((((((((...-.....)))))))))).)-)))))).(((....)))..))).)))....)))). ( -47.10, z-score = -3.30, R) >droYak2.chr2L 16363858 116 - 22324452 CUGGAGAAGGAACCACGACGCUGGUUCAGAUGCAUUGCAUCGUUCACUGCCGAACCGGUGGUUC-CAAAUUCAUCGGUUCAU-CGCGCCACAGUGGGCUUCAGUCAUAUAAUAUCAAA ((((((((.((((((......)))))).(((((...))))).)))...(((((((((((((...-.....))))))))))..-(((......)))))))))))............... ( -39.40, z-score = -2.57, R) >droEre2.scaffold_4929 15863337 116 + 26641161 CUGGAGAAGGAACCGCGACGCUAGUUCAGAUGCAUUGCUUCGUUCACCGGCGAACCGGUGGUUC-CGAAUUCAUCGGUUCAU-CGCGCUACAGUGGGCUGCAGUUGUAUGGUAUCAAA .((((...((((((((((.((..((......))...)).))))..(((((....))))))))))-)...))))..(((((((-.(((((.(((....))).)).))))))).)))... ( -35.50, z-score = 0.20, R) >droWil1.scaffold_180772 6802796 101 + 8906247 CUGUGUGACGCUGGGUGCCACUGAGUUCGGUACCUGCUUCUGUUGAUCGG--AACUGGUUCCAUCAAGGUACAUGAUCAUGUGCGGGUGUCUACAGUGUAAAC--------------- (((((.(((((((((((((.........))))))).......(((((.((--((....))))))))).((((((....)))))).))))))))))).......--------------- ( -36.40, z-score = -1.97, R) >droMoj3.scaffold_6500 14694605 98 - 32352404 -----------ACAGCGACGCCAGUUCAAGUCGACUGGUUCAUUCAGCUGAAAAAAAAUCUUUAACUGGUUCAAUGGUUCAU-UAGGCAUAAAUAGUGUGUGUCUGUGUG-------- -----------.((..((.(((((((.((((((.((((.....)))).)))........))).)))))))))..))...(((-.(((((((.......))))))))))..-------- ( -21.50, z-score = -0.45, R) >consensus CUGGAGAAGGAACCGCGACGCUGGUUCAGAUGCAUUGCUUCGUUCACCGGCGAACCGGUGAUUC_CGAAUUCAUCGGUUCAU_CGCGCUACAGUGGACUGAAUCUAUCUGGUAUCAGA ............((((...((((((...((.(.....).))....))))))((((((((((((....)))).))))))))............))))...................... (-12.39 = -13.26 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:22:35 2011