| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,811,576 – 6,811,653 |
| Length | 77 |
| Max. P | 0.871879 |
| Location | 6,811,576 – 6,811,653 |
|---|---|
| Length | 77 |
| Sequences | 12 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 76.80 |
| Shannon entropy | 0.44108 |
| G+C content | 0.29974 |
| Mean single sequence MFE | -13.18 |
| Consensus MFE | -9.48 |
| Energy contribution | -9.33 |
| Covariance contribution | -0.15 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.871879 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 6811576 77 - 27905053 -------------AAAGGUUGUCGGGGCCACAAAAAUGUUCUAAUUUAUUAUUUUGCGCAUUUAAAUAUUUUAAGUGUCCCGCAGGACUU -------------..(((((.(((((((.((.((((((((..(((..............)))..))))))))..)))))))).).))))) ( -16.14, z-score = -1.06, R) >droSim1.chr3R 12965276 77 + 27517382 -------------AUGGGUUUUCGGGGCCACAAAAAUUUUCUAAUUUAUUAUUUUGCGCAUUUAAAUAUUUUAAGUGUCCCGCAGGACUU -------------..(((((((((((.......(((((....)))))..........((((((((.....)))))))))))).))))))) ( -15.10, z-score = -0.95, R) >droSec1.super_0 5973491 77 + 21120651 -------------AUGGGUUUUCGGGGCCACAAAAAUUUUCUAAUUUAUUAUUUUGCGCAUUUAAAUAUUUUAAGUGUCCCGCAGGACUU -------------..(((((((((((.......(((((....)))))..........((((((((.....)))))))))))).))))))) ( -15.10, z-score = -0.95, R) >droYak2.chr3R 10845267 77 - 28832112 -------------AAAGGUUUUCGGAGCCACAAAAAUUUUCUAAUUUAUUAUUUUGCGCAUUUAAAUAUUUUAAGUGUCCCGCAGGACUU -------------...(((((...)))))......................((((((((((((((.....)))))))...)))))))... ( -12.70, z-score = -0.85, R) >droEre2.scaffold_4770 2945746 77 + 17746568 -------------AAAGGUUUUCGGGGCCACGAAAAUUUUCUAAUUUAUUAUUUUGCGCAUUUAAAUAUUUUAAGUGUCCCGCAGGACUU -------------.((((((((((......))))))))))...........((((((((((((((.....)))))))...)))))))... ( -17.10, z-score = -1.70, R) >droAna3.scaffold_13340 11382585 90 + 23697760 AAAGUUUUUCAUUUUUUUAUUCAGAGGACACAAAAAUUUUCUAAUUUAUUAUUUUGCGCAUUUAAAUAUUUUAAGUGUCCCGCAGGACUU (((((((((...((((((....))))))...)))))))))...........((((((((((((((.....)))))))...)))))))... ( -11.90, z-score = -0.97, R) >dp4.chr2 28263707 66 - 30794189 ------------------------GAAAAAAAAGAAAGUCCUAAUUUAUUAUUUUGCGCAUUUAAAUAUUUUAAGUGUCCCGCAGGAUAU ------------------------.........................((((((((((((((((.....)))))))...))))))))). ( -11.70, z-score = -2.19, R) >droPer1.super_6 3599580 67 - 6141320 -----------------------AAAGGAAAAAAAACUUCCUAAUUUAUUAUUUUGCGCAUUUAAAUAUUUUAAGUGUCCCGCAGGAUAU -----------------------..(((((.......))))).......((((((((((((((((.....)))))))...))))))))). ( -15.50, z-score = -3.17, R) >droWil1.scaffold_181130 7542229 62 - 16660200 ----------------------------CAGAGAAAAUUUCUAAUUUAUUAUUUUGCGCAUUUAAAUAUUUUAAGUGUCCCGCAGGACAC ----------------------------.(((((...))))).........((((((((((((((.....)))))))...)))))))... ( -10.00, z-score = -1.72, R) >droVir3.scaffold_13047 14133295 66 + 19223366 ------------------------UUAGUUUGGAAAAUUGCUAAUUUAUUAUUUUGCGCAUUUAAAUAUUUUAAGUGUCCCGCAGGAUUU ------------------------(((((((....))..)))))......(((((((((((((((.....)))))))...)))))))).. ( -11.20, z-score = -0.73, R) >droMoj3.scaffold_6594 2 66 - 1204 ------------------------UUAGUUUGGAAAAUUGCUAAUUUAUUAUUUUGCGCAUUUAAAUAUUUUAAGUGUCCCGCAAGGAUU ------------------------(((((((....))..))))).......((((((((((((((.....)))))))...)))))))... ( -10.50, z-score = -0.40, R) >droGri2.scaffold_14906 3676469 66 + 14172833 ------------------------UUAGUUUGGAAAAUUGCUAAUUUAUUAUUUUGCGCAUUUAAAUAUUUUAAGUGUCCCGCAGGAUUU ------------------------(((((((....))..)))))......(((((((((((((((.....)))))))...)))))))).. ( -11.20, z-score = -0.73, R) >consensus _______________________GGGGCCACAAAAAUUUUCUAAUUUAUUAUUUUGCGCAUUUAAAUAUUUUAAGUGUCCCGCAGGACUU ...................................................((((((((((((((.....)))))))...)))))))... ( -9.48 = -9.33 + -0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:04:47 2011