Locus 9455

Sequence ID dm3.chr3R
Location 6,796,928 – 6,797,045
Length 117
Max. P 0.999032
window12966

overview

Window 6

Location 6,796,928 – 6,797,045
Length 117
Sequences 7
Columns 117
Reading direction reverse
Mean pairwise identity 71.58
Shannon entropy 0.54516
G+C content 0.36468
Mean single sequence MFE -21.27
Consensus MFE -11.17
Energy contribution -13.26
Covariance contribution 2.09
Combinations/Pair 1.45
Mean z-score -2.94
Structure conservation index 0.53
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 3.61
SVM RNA-class probability 0.999032
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 6796928 117 - 27905053
AUUAAUUAAUCAGAAUUUCCUGAUUGAUUUCCUCAAGGUGUAGGCUAAAAAAUGGCACCGCUACAACUUAACCUACACCACCAUCAAAAUCACGCAUCACACCGCUUACAAAAAAAA
...((((((((((......)))))))))).......((((((((.(((....((((...))))....))).))))))))..............((........))............ ( -26.20, z-score =  -5.22, R)
>droSim1.chr3R 12950486 116 + 27517382
AUUAAUUAAUCAGAAUUUCCUGAUUGAUUUCCUCAAGGUGUAGGCUAAAAAAUGGCACCGCUACAACUUAACCUACACCACCAUCAAAAUCACGCAUCACACCGCUUACAAAAAAA-
...((((((((((......)))))))))).......((((((((.(((....((((...))))....))).))))))))..............((........))...........- ( -26.20, z-score =  -5.30, R)
>droSec1.super_0 5959256 116 + 21120651
AUUAAUUAAUCAGAAUUUCCUGAUUGAUUUCCUCAAGGUGUAGGCUAAAAAAUGGCACCGCUACAACUUAACCUACACCACCAUCAAAAUCACCCAUCACACCGCUUACAAAAAAA-
...((((((((((......)))))))))).......((((((((.(((....((((...))))....))).)))))))).....................................- ( -25.40, z-score =  -5.26, R)
>droYak2.chr3R 10830266 116 - 28832112
CUUAAUUAAUCAGAAUUUCCCGAUUGAUUUCGUCAAGGUGUAGGCUAAAAAAUGGCACCGCUACAACUUAACCUACACCACCAUCAAAAUCACGCAUCACACCGCUUACAAAAAAA-
...((((((((.(......).)))))))).......((((((((.(((....((((...))))....))).))))))))..............((........))...........- ( -21.60, z-score =  -3.19, R)
>droEre2.scaffold_4770 2931004 116 + 17746568
AUUAAUUAAUCAGAAUUUUCUGAUUGAUUUCGUCAAGGUUUUGGCUAAAAAAUGGCACCGCUACAACUGAACCUACACCACCAUCAAAAUCACGCAUCACACCGCUUACAAAAAAA-
...(((((((((((....))))))))))).......(((((((((((.....))))...........((......)).......)))))))..((........))...........- ( -17.80, z-score =  -1.46, R)
>droMoj3.scaffold_6540 21317289 96 - 34148556
AUUCAUUAAUGAAAUUGUCUUUAUGCUUUUUCGAA--AUAUGCAUCAAAAAG-GGCAUAAACUGAA---AAACUAUCGUACUAU-GUAUUUACGAUUGGCGUC--------------
.((((....)))).........(((((((((((..--.(((((.((.....)-))))))...))))---)))(.((((((....-.....)))))).))))).-------------- ( -14.90, z-score =  -0.52, R)
>droGri2.scaffold_14906 3657649 97 + 14172833
AUUCAUUAAUAGGAUUUUCUUUAUGCUUUUCGAAAUGCUGUGCGAAAAAAAG-GGCACAAG-GGAG---AAACUACCGUACUAU-GUACUUACGACUGUCCGC--------------
...........(((((((((((.(((((((.....(((...))).....)))-)))).)))-))))---).......((((...-)))).........)))..-------------- ( -16.80, z-score =   0.39, R)
>consensus
AUUAAUUAAUCAGAAUUUCCUGAUUGAUUUCCUCAAGGUGUAGGCUAAAAAAUGGCACCGCUACAACUUAACCUACACCACCAUCAAAAUCACGCAUCACACCGCUUACAAAAAAA_
...((((((((((......)))))))))).......((((((((........((((...))))........))))))))...................................... (-11.17 = -13.26 +   2.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:04:44 2011