| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,789,788 – 6,789,890 |
| Length | 102 |
| Max. P | 0.800891 |
| Location | 6,789,788 – 6,789,890 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 88.32 |
| Shannon entropy | 0.20598 |
| G+C content | 0.48932 |
| Mean single sequence MFE | -21.57 |
| Consensus MFE | -18.09 |
| Energy contribution | -18.09 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.800891 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6789788 102 + 27905053 CUAUACAAUAUUUAUUUUCCCACGAUUAUUUCGCCAGUCAGUCAGCACACC--AUCCCCUUCAGCUCGCCGCAUUUUCCUGAUGCUGAUUCUUUGGCGGUGGAC ...................((((((.....))(((((..((((((((....--.......((((..............))))))))))))..))))).)))).. ( -24.24, z-score = -2.59, R) >droYak2.chr3R 10822882 102 + 28832112 CUAUACAAUAUUUAUUUUCCCACGAUUAUUUCGCCAGUCAGUCAGCAACCGC--UCCUCUCCCCUUGUUGGCAUUUCCCUGAUGCUGAUUCUUCGGCGGUGGAC .............................((((((.....((((((((....--..........))))))))...........(((((....))))))))))). ( -21.54, z-score = -0.96, R) >droEre2.scaffold_4770 2923889 101 - 17746568 CUAUACAAUAUUUAUUUUCCCACGAUUAUUUCGCCAGUCAGUCAGCA-CCCC--GCCCAUCUCCCUACCCGCAUGUCCCUGAUGCUGAUUCUUCGGCGGUGGAC ...................((((((.....))(((.(..((((((((-.(..--(..((((.........).)))..)..).))))))))..).))).)))).. ( -20.20, z-score = -1.08, R) >droSec1.super_0 5952231 104 - 21120651 CUAUACAAUAUUUAUUUUCCCACGACUAUUUCGCCAGUCAGUCAGCACACCCCACCCCCUUUAGUUCGCCGCAUUUUCCUGAUGCUGAUUCUUCGGCGGUGGAC ...................((((((((........))))...........................(((((((((.....))))).((....)))))))))).. ( -21.60, z-score = -2.00, R) >droSim1.chr3R 12943332 104 - 27517382 CUAUACAAUAUUUAUUUUCCCACGAUUAUUUCGCCAGUCAGUCAGCACACCCCACCCCCUUCAGCUCACCGCAUUUUCCUGAUGCUGAUUCUUCGGCGGUGGAC ...................((((((.....))(((.(..((((((((.............((((..............))))))))))))..).))).)))).. ( -20.25, z-score = -1.82, R) >consensus CUAUACAAUAUUUAUUUUCCCACGAUUAUUUCGCCAGUCAGUCAGCACACCC_ACCCCCUUCAGCUCGCCGCAUUUUCCUGAUGCUGAUUCUUCGGCGGUGGAC ...................((((((.....))(((.(..((((((((...................................))))))))..).))).)))).. (-18.09 = -18.09 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:04:43 2011