| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,784,068 – 6,784,142 |
| Length | 74 |
| Max. P | 0.915893 |
| Location | 6,784,068 – 6,784,142 |
|---|---|
| Length | 74 |
| Sequences | 5 |
| Columns | 77 |
| Reading direction | forward |
| Mean pairwise identity | 61.80 |
| Shannon entropy | 0.66334 |
| G+C content | 0.58963 |
| Mean single sequence MFE | -25.50 |
| Consensus MFE | -13.34 |
| Energy contribution | -11.18 |
| Covariance contribution | -2.16 |
| Combinations/Pair | 1.86 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.915893 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6784068 74 + 27905053 -CCGAGUCGAGGCGGUACAAACCUCCAUCCGUAA-AAGCCAGGGGGAAAUCCGUGGCCUACGUGGGAACCCCUUUC- -.......((((.(((.......(((...((((.-..((((.(((....))).)))).))))..))))))))))..- ( -22.91, z-score = 0.16, R) >dp4.Unknown_group_286 28775 70 + 32412 -CCGAAAAGGGGCGGUAUAU-CCCUCACCGACCA-GAAGCCAAGGGAAACCUGUGGCCAGCGCGGGAUCCCCU---- -......(((((((((....-.....)))).((.-(..(((((((....))).))))...)..))...)))))---- ( -25.20, z-score = -0.61, R) >droPer1.super_1972 1203 74 - 5480 CCGAAAAAGGGGAGGUAUAU-CCCCCAUCGACCA-GAAGCCAAGGGAAACCUGUGGCCAGCGCGGGAUCCCCUAUC- .......((((((((.....-))(((.((.....-)).(((((((....))).))))......))).))))))...- ( -28.20, z-score = -1.83, R) >droWil1.scaffold_181145 169516 71 - 2682060 -CCGAGUUGGAGCGGCAUAA-CUCCCAGCGUU---GUGGCAAGAGGAAAUUCUUGUCCUGCGAGGGAAAUUGCCUG- -............((((...-.((((..(((.---(.((((((((....))))))))).))).))))...))))..- ( -24.50, z-score = -1.50, R) >droVir3.scaffold_12734 498670 74 - 510240 -CCGAUUCGGAGCGCUAUAG-CUCCCAGCGGUCAAAAGCCUGAGGGAAACUUCUGGCCACCGAGGGAC-UUCCAUGU -((.....(((((......)-))))...((((.....(((.((((....)))).))).)))).))...-........ ( -26.70, z-score = -1.30, R) >consensus _CCGAAUAGGGGCGGUAUAA_CCCCCAGCGAUCA_GAGGCAAAGGGAAACCUGUGGCCAGCGAGGGAACCCCUAUC_ ........((((.........)))).................((((...((((((.....))))))...)))).... (-13.34 = -11.18 + -2.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:04:42 2011