| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,769,456 – 6,769,550 |
| Length | 94 |
| Max. P | 0.559526 |
| Location | 6,769,456 – 6,769,550 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 67.90 |
| Shannon entropy | 0.62386 |
| G+C content | 0.44837 |
| Mean single sequence MFE | -23.10 |
| Consensus MFE | -10.43 |
| Energy contribution | -9.90 |
| Covariance contribution | -0.53 |
| Combinations/Pair | 1.25 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.559526 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6769456 94 + 27905053 CAAAGACGGCGAAAUAAAGCAAUUAAGCGGCUUACAAAUGCCUGCCAUUGC---A----------------GUGGGUAUCUAAAUAUCCCAGGACCAAGCACAGAUACAGAUA ........((........(((((...(((((........))).)).)))))---.----------------(.((((((....)))))))........))............. ( -18.10, z-score = 0.02, R) >droSec1.super_0 5937505 108 - 21120651 CAAAGACGGCGAAAUAAAGCAAUUAAGCGGCUUACAAAUGCCAGACAUUGC---AGUAUGUAGCCAAGU--GUGGGUAUCUGAAUAUCCCAGGACCAAGCACAGAUACAGAUA .......(((...(((..(((((.....(((........)))....)))))---..)))...)))..((--((.(((.((((.......)))))))..))))........... ( -27.30, z-score = -1.94, R) >droYak2.chr3R 10807352 108 + 28832112 CAAAGACGGCGAAAUAAAGCAAUUAAGCGGCUUACAAAUGCCAGCCAUUGC---CAAAUGUAGCCGAGU--GUGGGUAUCUGAAUAUCCCAGGACCAACUACAGAUACAGAUA ......((((........(((((...(((((........))).)).)))))---........))))(((--...(((.((((.......))))))).)))............. ( -25.99, z-score = -1.35, R) >droEre2.scaffold_4770 2908817 108 - 17746568 CAAAGACGGCGAAAUAAAGCAAUUAAGCGGCUUACAAAUGCCAGCCAUUGC---AGAAUGUAGCUCAGU--GGGGGUAUCUGAAUAUCCCAGGACCAACUACAGAUACAGAUA .......(((........((......))(((........))).)))(((..---....(((((......--.(((((((....)))))))........)))))......))). ( -25.36, z-score = -0.85, R) >droAna3.scaffold_13340 11346025 108 - 23697760 UCUGACUGGCGCAAUAAAGCAAUUAAGCGGCUUACAAAUGCCAACCAUUGC---AGAAUGAAACUAAGUAUGUGAGUAUCUGGAUAUCCUUCGCCC--UCUCAGACACACACU (((((..((((((((...((......))(((........)))....)))))---.(((.((..(((..(((....)))..)))...)).)))))).--..)))))........ ( -26.30, z-score = -1.75, R) >dp4.chr2 28203204 88 + 30794189 CAAAGACGGCGGAAUAAAGCAAUUAAGCGGCUUACAAAUGCCAGCCAUUGCCAGAGAACUGCCAGAAGAAGAAGAACAUUUGGGUGUG------------------------- .......(((((......(((((...(((((........))).)).))))).......)))))............((((....)))).------------------------- ( -19.32, z-score = -0.64, R) >droPer1.super_6 3536641 88 + 6141320 CAAAGACGGCGGAAUAAAGCAAUUAAGCGGCUUACAAAUGCCAGCCAUUGCCGGAGAACUGCCAAAAGAAGAAGAACAUUCGGGUGUG------------------------- .......(((((......(((((...(((((........))).)).))))).......)))))............((((....)))).------------------------- ( -19.32, z-score = -0.29, R) >consensus CAAAGACGGCGAAAUAAAGCAAUUAAGCGGCUUACAAAUGCCAGCCAUUGC___AGAAUGUAGCCAAGU__GUGGGUAUCUGAAUAUCCCAGGACCAA_CACAGAUACAGAUA .......(((........((......))(((........))).))).............................((((....)))).......................... (-10.43 = -9.90 + -0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:04:39 2011