| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,940,731 – 6,940,816 |
| Length | 85 |
| Max. P | 0.599583 |
| Location | 6,940,731 – 6,940,816 |
|---|---|
| Length | 85 |
| Sequences | 13 |
| Columns | 87 |
| Reading direction | reverse |
| Mean pairwise identity | 79.56 |
| Shannon entropy | 0.47096 |
| G+C content | 0.60353 |
| Mean single sequence MFE | -32.28 |
| Consensus MFE | -14.40 |
| Energy contribution | -14.88 |
| Covariance contribution | 0.49 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.599583 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6940731 85 - 23011544 UACAAGGAGCAUGGAGCCCGCAGAGCCGGCGAAGAGGUGGCCGCCUCCUCGCCCAAUCUCUCCGAUGCCCAGAGUUCUCGGUAAG-- (((..(((((.(((.((.((.((((..(((((.(((((....))))).)))))....)))).))..)))))..)))))..)))..-- ( -36.30, z-score = -2.60, R) >anoGam1.chr3R 36930461 85 + 53272125 UACAAAGAGCACGGCAACAAGCGGAAUGGGGACGAUAUAGCCGCUUCCACGCCGGUGCUGCCCGGCUCAACACAGUCACGGUAAG-- .......((((((((...((((((..((....))......))))))....))).)))))(((.((((......))))..)))...-- ( -26.50, z-score = -0.80, R) >droGri2.scaffold_15252 7888064 85 + 17193109 UACAAAGAACAUGGCGCACGAAGAGGGGGCGACGAUGUGGCCGCCUCCUCGCCAAAUCUUUCAGAUGCCCAAAGUGCCCGGUGAG-- .........(((.(.((((...(((((((((.(......).)))))))))((...(((.....))))).....)))).).)))..-- ( -29.20, z-score = -1.18, R) >droMoj3.scaffold_6500 14685331 85 + 32352404 UACAAGGAACAUGGAGCCCGACGAGGAGGCGACGAGGUGGCCGCAUCCUCACCGAAUCUGUCGGACGCGCAGAGCUCACGGUAAA-- ........((...((((.((..((((((((.((...)).)))...)))))..))..((((.((....))))))))))...))...-- ( -25.60, z-score = 0.32, R) >droVir3.scaffold_12963 5479499 87 + 20206255 UAUAAGGAACAUGGAGCCCGGCGAGGUGGCGACGAUGUUGCCGCAUCCUCGCCAAAUCUUUCAGAUGCCCAAAGCUCGCGGUAUGAA .........((((..((..((((((((((((((...)))))))...)))))))..........((.((.....))))))..)))).. ( -29.30, z-score = -0.96, R) >droWil1.scaffold_180772 6791078 85 - 8906247 UAUAAGGAACAUGGAGCUCGGAGACCUGGCGAAGAAGUGGCCGCUUCUUCGCCAAAUCUCUCCGAUGCCCAAAAUGCGCGGUAAA-- ...........(((.(((((((((..((((((((((((....))))))))))))....))))))).)))))..............-- ( -37.90, z-score = -4.69, R) >droPer1.super_5 4935079 85 - 6813705 UACAAGGAGCAUGGAGCCCGUAGACCCGGCGAAGAAGUGGCCGCUUCAUCGCCAAAUCUCUCCGAUGGCCAGAGUUCGCGGUGAG-- .....((..(((((...)))).)..))(((((.(((((....))))).)))))....(((.(((..(((....)))..))).)))-- ( -27.60, z-score = -0.53, R) >dp4.chr4_group5 437081 85 - 2436548 UACAAGGAGCAUGGAGCCCGUAGACCCGGCGAAGAAGUGGCCGCUUCAUCGCCAAAUCUCUCCGAUGGCCAGAGUUCGCGGUGAG-- .....((..(((((...)))).)..))(((((.(((((....))))).)))))....(((.(((..(((....)))..))).)))-- ( -27.60, z-score = -0.53, R) >droAna3.scaffold_12916 8521580 85 - 16180835 UACAAGGAGCAUGGGGCCCGCCGAGCCGGAGAGGAGGUGGCGGCCUCUUCUCCAAAUCUCUCCGAUGCCCAAACUUCACGGUCAG-- .....((((....((((.((..(((..(((((((((((....)))))))))))....)))..))..))))...))))........-- ( -33.60, z-score = -1.17, R) >droYak2.chr2L 16355100 85 + 22324452 UACAAGGAGCAUGGAGCCCGCAGAGCUGGCGAUGAGGUGGCCGCCUCCUCGCCCAACCUCUCCGAUGCCCAAAGUUCUCGGUAAG-- (((..(((((.(((.((.((.((((..(((((.(((((....))))).)))))....)))).))..)))))..)))))..)))..-- ( -34.90, z-score = -2.46, R) >droEre2.scaffold_4929 15855296 85 - 26641161 UACAAGGAGCAUGGAGCCCGUAGAGCUGGCGAUGAGGUGGCCGCCUCCUCGCCCAACCUCUCCGAUGCCCAGAGUUCUCGGUAAG-- (((..(((((.(((.((.((.((((..(((((.(((((....))))).)))))....)))).))..)))))..)))))..)))..-- ( -36.30, z-score = -2.74, R) >droSec1.super_3 2473662 85 - 7220098 UACAAGGAGCAUGGAGCCCGCAGAGCUGGCGAAGAGGUGGCCGCCUCCUCGCCCAACCUCUCCGAUGCCCAGAGUUCUCGGUAAG-- (((..(((((.(((.((.((.((((..(((((.(((((....))))).)))))....)))).))..)))))..)))))..)))..-- ( -36.30, z-score = -2.48, R) >droSim1.chr2L 6736375 85 - 22036055 UACAAGGAGCAUGGAGCGCGCAGAGCUGGCGAAGAGGUGGCCGCCUCCUCGCCCAACCUCUCCGAUGCCCAGAGUUCUCGGUAAG-- (((..(((((.(((.(((((.((((..(((((.(((((....))))).)))))....)))).)).))))))..)))))..)))..-- ( -38.60, z-score = -2.81, R) >consensus UACAAGGAGCAUGGAGCCCGCAGAGCUGGCGAAGAGGUGGCCGCCUCCUCGCCAAAUCUCUCCGAUGCCCAGAGUUCUCGGUAAG__ (((...(((..(((.............(((((.(((((....))))).)))))...............)))...)))...))).... (-14.40 = -14.88 + 0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:22:34 2011