| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,749,546 – 6,749,640 |
| Length | 94 |
| Max. P | 0.600230 |
| Location | 6,749,546 – 6,749,640 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 85.28 |
| Shannon entropy | 0.26627 |
| G+C content | 0.52216 |
| Mean single sequence MFE | -20.75 |
| Consensus MFE | -12.16 |
| Energy contribution | -12.13 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.600230 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6749546 94 - 27905053 UUCCGCGUCCCUUAGCCACGCACACAG-------ACGCCAGUG--AGUGUCAUAUGUAAAUUCUCCCCUGACGCCAUUGACAAAGACACUUCACUGCAUCCCC ....(((((.....((...)).....)-------))))(((((--((((((...(((.(((((......))....))).)))..))))).))))))....... ( -21.50, z-score = -2.67, R) >droSim1.chr3R 12907972 94 + 27517382 UUCCCCCACCCUUAGCCACGCACACAG-------AUGCCAGUG--AGUGUCAUAUGUAAAUUCUCCCCUGACGCCAUUGACAAAGACACUUCACUGCAUCCCC ..........................(-------((((.((((--((((((...(((.(((((......))....))).)))..))))).))))))))))... ( -20.30, z-score = -3.32, R) >droSec1.super_0 5917551 94 + 21120651 UCCCCCCACCCUUAGCCACGCACACAG-------AUGCCAGUG--AGUGUCAUAUGUAAAUUCUCCCCUGACGCCAUUGACAAAGACACUUCACUGCAUCCCC ..........................(-------((((.((((--((((((...(((.(((((......))....))).)))..))))).))))))))))... ( -20.30, z-score = -3.37, R) >droYak2.chr3R 10786623 93 - 28832112 -UUCCCCUCCCUUGGCCACGCACACAA-------AUGCCAGUG--AGUGUCAUAUGUAAAUUCUCCCCUGACGCCAUUGACAAAGACACUUCACUGCAUCCCC -....((......))............-------((((.((((--((((((...(((.(((((......))....))).)))..))))).))))))))).... ( -17.40, z-score = -1.64, R) >droEre2.scaffold_4770 2887685 93 + 17746568 -UUCCCCUCCCUUAGCCACGCACACAG-------AUGCCAGUG--AGUGUCAUAUGUAAAUUCUCCCCUGACGCCAUUGACAGAGACACUUCACUGCAUCCCC -.........................(-------((((.((((--((((((...(((.(((((......))....))).)))..))))).))))))))))... ( -21.40, z-score = -3.05, R) >dp4.chr2 2623222 103 + 30794189 GCACACGAUACAGAGGGAUGGAGAGAGGGUGCUAGUGCCAGUGCUAGUGUCAUAUGUAAAUUCUCCCCUGACGCCAUUGACAGAGACACUUGACUAUGCAACC (((.......(((.((((.(((.(.(.((..((((((....))))))..))...).)...))))))))))..........(((......)))....))).... ( -23.60, z-score = 0.97, R) >consensus UUCCCCCACCCUUAGCCACGCACACAG_______AUGCCAGUG__AGUGUCAUAUGUAAAUUCUCCCCUGACGCCAUUGACAAAGACACUUCACUGCAUCCCC ..................................((((.((((...(((((...(((.(((((......))....))).)))..)))))..)))))))).... (-12.16 = -12.13 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:04:35 2011