| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,746,716 – 6,746,809 |
| Length | 93 |
| Max. P | 0.905081 |
| Location | 6,746,716 – 6,746,809 |
|---|---|
| Length | 93 |
| Sequences | 9 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 89.10 |
| Shannon entropy | 0.20839 |
| G+C content | 0.30660 |
| Mean single sequence MFE | -17.52 |
| Consensus MFE | -14.85 |
| Energy contribution | -15.02 |
| Covariance contribution | 0.18 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.905081 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 6746716 93 + 27905053 UUACAUUUGACUUAAAUAUGCGUAUUUUCGCAUAAAUUACAAAAUAUUUCGCAU-UCCAUUU---------UAUUCGUGCACCACGCGAUAUAUUUGUCAUAU----- .......((((.....((((((......)))))).......((((((.((((..-..(((..---------.....)))......)))).))))))))))...----- ( -17.30, z-score = -2.16, R) >droSim1.chr3R 12905245 93 - 27517382 UUACAUUUGACUUAAAUAUGCGUAUUUUCGCAUAAAUUACAAAAUAUUUCGCAU-UCCAUUU---------UAUUCGUGCACCACGCGAUAUAUUUGUCAUAU----- .......((((.....((((((......)))))).......((((((.((((..-..(((..---------.....)))......)))).))))))))))...----- ( -17.30, z-score = -2.16, R) >droSec1.super_0 5914771 93 - 21120651 UUACAUUUGACUUAAAUAUGCGUAUUUUCGCAUAAAUUACAAAAUAUUUCGCAU-UCCAUUU---------UAUUCGUGCACCACGCGAUAUAUUUGUCAUAU----- .......((((.....((((((......)))))).......((((((.((((..-..(((..---------.....)))......)))).))))))))))...----- ( -17.30, z-score = -2.16, R) >droYak2.chr3R 10783654 93 + 28832112 UUACAUUUGACUUAAAUAUGCGUAUUUUCGCAUAAAUUACAAAAUAUUUCGCAU-UCCAUUU---------UAUUCGUGCACCACGCGAUAUAUUUGUCAUAU----- .......((((.....((((((......)))))).......((((((.((((..-..(((..---------.....)))......)))).))))))))))...----- ( -17.30, z-score = -2.16, R) >droEre2.scaffold_4770 2884733 93 - 17746568 UUACAUUUGACUUAAAUAUGCGUAUUUUCGCAUAAAUUACAAAAUAUUUCGCAU-UCCAUUU---------UAUUCGUGCACCACGCGAUAUAUUUGUCAUAU----- .......((((.....((((((......)))))).......((((((.((((..-..(((..---------.....)))......)))).))))))))))...----- ( -17.30, z-score = -2.16, R) >droAna3.scaffold_13340 11324438 99 - 23697760 UUACAUUUGACUUAAAUAUGCGUAUUUUCGCAUAAAUUACAAAACGUUUCGCAUGUGAAUUC---------CAUUCGUGCACCACGCGAUAUAUUUGUCAUAUUCUAU .......((((.....((((((......)))))).......(((..(.((((....((((..---------.))))(((...))))))).)..)))))))........ ( -17.40, z-score = -1.03, R) >droVir3.scaffold_13047 14063599 103 - 19223366 UUACAUUUGACUUAAAUAUGCGUAUUUUCGCAUAAAUUACAAAAUAUUUCGCAUACACAUUCACACACACACGUUCGUGCUCCACGCGAUAUGUUUGCCAUAU----- ................((((((......)))))).......((((((.((((............((......))..(((...))))))).)))))).......----- ( -15.70, z-score = -0.84, R) >droMoj3.scaffold_6540 21264584 94 + 34148556 UUACAUUCGACUUAAAUAUGCGUAUUUUCGCAUAAAUUACAAAAUAUUUCGCAUACAUAUUC---------UGUUCGUGUACCACGCGAUAUGUUUGUCAUAU----- ........(((.....((((((......)))))).......((((((.((((.(((((....---------.....)))))....)))).)))))))))....----- ( -19.60, z-score = -2.25, R) >droGri2.scaffold_14906 3610251 98 - 14172833 UUACAUUUAACUUAAAUAUGCGUAUUUUCGCAUAAAUUACAAAAUAUUUCGCAUACAUGUUC---------UGUUCGUGUUCCACGCGAUAUGUUUGCCAUACACCU- ................((((((......)))))).......((((((.((((..(((((...---------....))))).....)))).))))))...........- ( -18.50, z-score = -2.18, R) >consensus UUACAUUUGACUUAAAUAUGCGUAUUUUCGCAUAAAUUACAAAAUAUUUCGCAU_UCCAUUU_________UAUUCGUGCACCACGCGAUAUAUUUGUCAUAU_____ .......((((.....((((((......)))))).......((((((.((((((....))................(((...))))))).))))))))))........ (-14.85 = -15.02 + 0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:04:33 2011