| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,746,313 – 6,746,374 |
| Length | 61 |
| Max. P | 0.909456 |
| Location | 6,746,313 – 6,746,374 |
|---|---|
| Length | 61 |
| Sequences | 3 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 72.68 |
| Shannon entropy | 0.38315 |
| G+C content | 0.52426 |
| Mean single sequence MFE | -12.08 |
| Consensus MFE | -9.40 |
| Energy contribution | -9.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.909456 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6746313 61 + 27905053 GUGUGUAUACUUCAUGCCCUGGCUUAAUCACACACACACACACGCACUCAAACCCAGACUC ((((((.........((....))........))))))........................ ( -9.63, z-score = -1.16, R) >droSec1.super_0 5914359 59 - 21120651 GUGUGUAUACAUCAUGCCCUGGCAUACUCGCACACACACAC--GCAGUCAAACCCACACUC ((((((.......((((....))))......))))))....--.................. ( -11.72, z-score = -1.15, R) >droEre2.scaffold_4770 2884329 54 - 17746568 GUGUGUGUAUCUCAUGCCCAGGCUU-CUCACACACACGCACACCAUGCCACACUC------ ((((((((.......((....))..-...))))))))(((.....))).......------ ( -14.90, z-score = -2.19, R) >consensus GUGUGUAUACAUCAUGCCCUGGCUUACUCACACACACACACACGCAGUCAAACCCA_ACUC ((((((.........((....))........))))))........................ ( -9.40 = -9.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:04:32 2011