| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,745,413 – 6,745,470 |
| Length | 57 |
| Max. P | 0.862229 |
| Location | 6,745,413 – 6,745,470 |
|---|---|
| Length | 57 |
| Sequences | 6 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 69.97 |
| Shannon entropy | 0.54890 |
| G+C content | 0.41520 |
| Mean single sequence MFE | -12.72 |
| Consensus MFE | -7.93 |
| Energy contribution | -8.77 |
| Covariance contribution | 0.83 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.862229 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6745413 57 + 27905053 UAAAGUGCAUUAAACUGACAUCAGCAGUCGGU-UUAUGUAAAAUGCUGG----CCAGGAAGC- .....(((((.((((((((.......))))))-)))))))....(((..----......)))- ( -13.70, z-score = -1.35, R) >droSec1.super_0 5913870 57 - 21120651 UAAAGUGCAUUAAACUGACAUCAGCAGUCGGU-UUAUGUAAAAUGCUGG----CCAGGAAAC- .....(((((.((((((((.......))))))-))))))).........----.........- ( -12.40, z-score = -1.22, R) >droYak2.chr3R 10782451 57 + 28832112 UAAAGUGCAUUAAACUGACAUCAACAGUCGGU-UUAUGUGAAAUGCUGG----CCAGGAAGC- ......((((.((((((((.......))))))-)))))).....(((..----......)))- ( -12.60, z-score = -0.99, R) >droEre2.scaffold_4770 2883663 57 - 17746568 UAAAGUGCAUUAAACUGACAUCAGCAGUCGGU-UUAUGUAAAAUGCUGG----CCAGGAAGC- .....(((((.((((((((.......))))))-)))))))....(((..----......)))- ( -13.70, z-score = -1.35, R) >droAna3.scaffold_13340 11323584 58 - 23697760 UGCAGCGCAUUGAAAUGAUAUCAGCUUUCGUU-UCAUGAUUAAAGCUGGA---CCAGGAAGU- ..((((.(((.(((((((.........)))))-)))))......))))..---.........- ( -12.20, z-score = -0.34, R) >droWil1.scaffold_181130 7479731 56 + 16660200 -------CCUUGGUGCGGCAGCAUAUGUCCUUCUCGUAUGCAAUAUUGAAAUUGCAUAAAAAC -------.....((((....))))............((((((((......))))))))..... ( -11.70, z-score = -0.92, R) >consensus UAAAGUGCAUUAAACUGACAUCAGCAGUCGGU_UUAUGUAAAAUGCUGG____CCAGGAAGC_ .....(((((...((((((.......))))))...))))).....(((......)))...... ( -7.93 = -8.77 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:04:31 2011