| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,724,707 – 6,724,779 |
| Length | 72 |
| Max. P | 0.508843 |
| Location | 6,724,707 – 6,724,779 |
|---|---|
| Length | 72 |
| Sequences | 4 |
| Columns | 73 |
| Reading direction | reverse |
| Mean pairwise identity | 81.01 |
| Shannon entropy | 0.30459 |
| G+C content | 0.34813 |
| Mean single sequence MFE | -15.30 |
| Consensus MFE | -8.89 |
| Energy contribution | -10.70 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.508843 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6724707 72 - 27905053 GUGGUAAAUAAAUGAAAUCGAGCUACGUUCCAAUAAAUAUUUGUUGGGACAAUAAGUAGCUCCGAAAAUUAU- .................(((((((((((((((((((....)))))))))).....)))))).))).......- ( -20.40, z-score = -4.59, R) >droEre2.scaffold_4770 2861509 73 + 17746568 GUGGCAAAUAAAUGAAAUUGUGCUUCGUUCCCAUAAAUAUCUGUUAGCAAAGUAAGUAGCGCCAGAAAUUGGU .((((..((((......))))((((.(((..((........))..))).)))).......))))......... ( -9.50, z-score = 0.76, R) >droYak2.chr3R 10760381 73 - 28832112 GUGGCAAAUAAAUGAAAUUGUGCUUCGUUCCAAUAAAUAUAUGUAAGCACAAUAAGUAGCGCCAAAGGAUCGC .((((...((......((((((((((((............))).)))))))))...))..))))......... ( -14.80, z-score = -1.37, R) >droSim1.chr3R 12876352 72 + 27517382 GUGGUAAAUAAAUGAAAUUCAGCUACGUUCCAAUAAAUAUUUGUUGGGGCAAUAAGUAGCUCCGAAAAUGAU- .................(((((((((((((((((((....)))))))))).....))))))..)))......- ( -16.50, z-score = -2.55, R) >consensus GUGGCAAAUAAAUGAAAUUGAGCUACGUUCCAAUAAAUAUUUGUUAGCACAAUAAGUAGCGCCAAAAAUUAG_ ...................((((((((((((((((......))))))))).....)))))))........... ( -8.89 = -10.70 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:04:27 2011