| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,717,137 – 6,717,251 |
| Length | 114 |
| Max. P | 0.743671 |
| Location | 6,717,137 – 6,717,251 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 88.34 |
| Shannon entropy | 0.15833 |
| G+C content | 0.47021 |
| Mean single sequence MFE | -37.60 |
| Consensus MFE | -30.35 |
| Energy contribution | -30.80 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.743671 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6717137 114 - 27905053 GAAUGCGAAGAUUCGGGUGAGUACAUG--UGGUGGGGUCAGUGCAUGGGGGCUUUGCUAGCUAGCUAGCUAAGCACUGAUCCACCGUUUAUUAUUCCCUCAUGAACACUAUUCAAA ((((((((....)))((.(((((....--(((((((.(((((((.(((.((((..(....).))))..))).)))))))))))))).....)))))))..........)))))... ( -37.50, z-score = -1.62, R) >droSim1.chr3R 12868523 111 + 27517382 GAAUGCGAAGAUUCGGGUGAGUACAUGCUGUGUGAGGUCAGUGCAAGGAGGGCUCUUG---UAGCUAGCUAAGCACUGAUCCACCGUUUAUUAUUCCCUCAUGA--GCUCUUCAAA ......(((((((((((.(((((...((.(.(((.(((((((((..((..((((....---.))))..))..)))))))))))))))....))))))))...))--).)))))... ( -37.90, z-score = -1.92, R) >droSec1.super_0 5887213 111 + 21120651 GAAUGCGAAGAUUCGGGUGAGUACAUGCUUUGUGAGGUCAGUGCAAGGAGGGCUCUUU---UAGCUAGCUAAGCACUGAUCCACCGUUUAUUAUUCCCUCAUGA--GCUCUUCAAA ......(((((((((((.(((((.(((..(.(((.(((((((((..((..((((....---.))))..))..)))))))))))).)..)))))))))))...))--).)))))... ( -37.40, z-score = -2.20, R) >consensus GAAUGCGAAGAUUCGGGUGAGUACAUGCUUUGUGAGGUCAGUGCAAGGAGGGCUCUUU___UAGCUAGCUAAGCACUGAUCCACCGUUUAUUAUUCCCUCAUGA__GCUCUUCAAA ......(((((.(((((.(((((.(((....(((.(((((((((..((..((((........))))..))..))))))))))))....)))))))))))...))....)))))... (-30.35 = -30.80 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:04:26 2011