| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,667,095 – 6,667,202 |
| Length | 107 |
| Max. P | 0.717580 |
| Location | 6,667,095 – 6,667,202 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 76.02 |
| Shannon entropy | 0.44726 |
| G+C content | 0.48296 |
| Mean single sequence MFE | -33.23 |
| Consensus MFE | -19.59 |
| Energy contribution | -20.67 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.717580 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6667095 107 - 27905053 -----AAGCUGCAGCCAGCUGUAAAUGCUCACAAUCUGCCUGUGGGCUCAGGAGCG-------UUUUUCUUUUUGCGCCACAGCCGUCAUCAGAAAACCUGAUAAAUGGUGCAGAAAGU -----.(((((....)))))..((((((((.......(((....)))....)))))-------)))..((((((((((((........(((((.....)))))...)))))))))))). ( -36.60, z-score = -1.79, R) >droAna3.scaffold_13340 6984938 118 - 23697760 AUGCUCCAGGGCUCCAUGUUGUAAAAGUUCAGAUUCUGCCUGGGGAGGAAGAAAGAAAGAAGUGCCUUGUUUUUGCAGUUCA-CCGUCAUCAGUAAACCUGAUAAAUGGUGCAGAAAGC .(.((((.((((......(((........))).....))))..)))).).........(((.(((.........))).)))(-((((.(((((.....)))))..)))))......... ( -27.20, z-score = 0.82, R) >droEre2.scaffold_4770 2802580 84 + 17746568 ------------------------AAGCUGCUG--CUG-CAGCGGGCCCAGAAGCG-------UUUUUCUUUUUGCAGC-CAGCCGUCAUCAGAAAACCUGAUAAAUGGUGCAGAAAGU ------------------------..(((((..--..)-))))..((......)).-------.....(((((((((.(-((....(.(((((.....))))).).)))))))))))). ( -27.30, z-score = -0.93, R) >droYak2.chr3R 10701116 106 - 28832112 -----GAGCUGCAGCCAGCUGUAAAUGCUUGCAAUCUGCCUGUGGGCCCAGAAGCG-------UUUUUCCUUUUGCACC-CAGCCGUCAUCAGAAAACCUGAUAAAUGGUGCAGAAAGU -----(((((((((....)))))...))))....(((((...((((..((((((.(-------.....)))))))..))-))(((((.(((((.....)))))..)))))))))).... ( -34.10, z-score = -1.67, R) >droSec1.super_0 5836802 107 + 21120651 -----AAGCUGCAGCCAGCUGUAAAUGCUCACAAUCUGCCUGUGGGCCCAGCAGCU-------UUUUUCUUUUUGCACCACAGCCGUCAUCAGAAAACCUGAUAAAUGGUGCAGAAAGU -----(((((((((....))......(((((((.......)))))))...))))))-------)....((((((((((((........(((((.....)))))...)))))))))))). ( -37.90, z-score = -2.83, R) >droSim1.chr3R 12817672 107 + 27517382 -----AAGCUGCAGCCAGCUGUAAAUGCUCACAAUCUGCCUGUGGGCCCAGGAGCG-------UUUUUCUUUUUGCACCACAGCCGUCAUCAGAAAACCUGAUAAAUGGUGCAGAAAGU -----.(((((....)))))..((((((((.......(((....)))....)))))-------)))..((((((((((((........(((((.....)))))...)))))))))))). ( -36.30, z-score = -2.06, R) >consensus _____AAGCUGCAGCCAGCUGUAAAUGCUCACAAUCUGCCUGUGGGCCCAGAAGCG_______UUUUUCUUUUUGCACCACAGCCGUCAUCAGAAAACCUGAUAAAUGGUGCAGAAAGU ......(((((....)))))......(((((((.......))))))).....................(((((((((((.........(((((.....)))))....))))))))))). (-19.59 = -20.67 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:04:22 2011