Locus 9432

Sequence ID dm3.chr3R
Location 6,651,886 – 6,652,002
Length 116
Max. P 0.880595
window12935

overview

Window 5

Location 6,651,886 – 6,652,002
Length 116
Sequences 3
Columns 116
Reading direction reverse
Mean pairwise identity 92.11
Shannon entropy 0.10866
G+C content 0.34222
Mean single sequence MFE -28.80
Consensus MFE -23.15
Energy contribution -23.93
Covariance contribution 0.78
Combinations/Pair 1.03
Mean z-score -2.43
Structure conservation index 0.80
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.05
SVM RNA-class probability 0.880595
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 6651886 116 - 27905053
GCCAUCAUCAGGUGGUGGUAGUAAUAUUUCUUAUUACCUACUUUAAAUAUUUCAAGUAGUUUUCGAAAGGGUCUUAAAAGUAGAUUACCUAGAUGCGACCGAAUUAUGUAAUGCUG
((((((....))))))((((((((......)))))))).........((((....(((((((.(....)((((.......(((.....))).....)))))))))))..))))... ( -22.40, z-score =  -0.33, R)
>droSim1.chr3R 12802657 110 + 27517382
---UCCAUCAGGUGGUG---GUAAUAUUUCUUAUUACCUACUUUAAAUAUUUUUAGGAGUUUCCGAAAGGGUCUUAAAAGUAGAUUACCUAGAUGCGACUGAAUUAUGUAAUGCUG
---((((((((((((((---((((((.....))))))).........(((((((((((...(((....)))))))))))))).))))))).)))).)).................. ( -32.30, z-score =  -3.62, R)
>droSec1.super_0 5822187 110 + 21120651
---GCCAUCAGGUGGUG---GUAAUAUUUCUUAUUACCUACUUUAAAUAUUUUUAGGAGUUUCCGAAAGGGUCUUAAAAGUAGAUUACCUAGAUGCGACUGAAUUAUGUAAUGCUG
---((.(((((((((((---((((((.....))))))).........(((((((((((...(((....)))))))))))))).))))))).))))).................... ( -31.70, z-score =  -3.33, R)
>consensus
___ACCAUCAGGUGGUG___GUAAUAUUUCUUAUUACCUACUUUAAAUAUUUUUAGGAGUUUCCGAAAGGGUCUUAAAAGUAGAUUACCUAGAUGCGACUGAAUUAUGUAAUGCUG
.....(((((((((((....((((((.....))))))..........(((((((((((...(((....)))))))))))))).))))))).))))..................... (-23.15 = -23.93 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:04:18 2011