| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,650,234 – 6,650,340 |
| Length | 106 |
| Max. P | 0.572772 |
| Location | 6,650,234 – 6,650,340 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.00 |
| Shannon entropy | 0.36027 |
| G+C content | 0.46276 |
| Mean single sequence MFE | -28.25 |
| Consensus MFE | -18.46 |
| Energy contribution | -19.60 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.572772 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6650234 106 + 27905053 -----CGGUGUCUUAAGUUCUCCGAUUCCCAAGAAUCACUCAGAAAAGCGCCUGAUAAGGGGCAAUAAAACGAAAUUGCACCAAUGCAGGGUCUAACAAUUCGAUGCCACA--------- -----.((((((...........(((((....))))).....(((..((.(((....))).))........((..(((((....)))))..))......)))))))))...--------- ( -28.10, z-score = -1.82, R) >droAna3.scaffold_13340 6963355 111 + 23697760 --------UGGCGGUGACUUUUAAGAUUCCGGGAAUGGCUUACAAACG-AUUUGAUAAGAGGCCAUAAAAUGAAAUUGCACCAAUGCAGAGGAGACCAUUGUUAGGCCGUGGAAGCCACA --------(((((....)........(((((.......(((((((...-..))).)))).((((....((((...(((((....))))).(....)))))....)))).))))))))).. ( -28.60, z-score = -1.08, R) >droEre2.scaffold_4770 2785777 106 - 17746568 -----CGGUGUCUUAAGUUCUCCGAUUCCCAAGAAUCACUCAGAAAAGCGCCUGAUAAGUGGCAAUAAAGCGAAAUUGCCCCAAUGCAGGGCCUAACAAUUCGAUGCCACA--------- -----.((((((.....((((..(((((....)))))....))))..((.((((......((((((........))))))......))))))..........))))))...--------- ( -28.10, z-score = -1.87, R) >droYak2.chr3R 10683842 111 + 28832112 CGUGCCGGUGUCUUAAGUUCCCCGAUUCCUAAGAAUCACUCAGAAAAGCGCCUGAUAAGGGGCAAUAAAGCGAAAUUGCACCAAUGCAGGGCCUAACAAUUCGAUGCCACA--------- ......((((((...........(((((....)))))..........((.((((.....(((((((........))))).))....))))))..........))))))...--------- ( -28.30, z-score = -0.45, R) >droSec1.super_0 5820577 106 - 21120651 -----CGGUGUCUUAAGUUCUCCGAUUCCCAAGAAUCACUCAGAAAAGCGCCUGAUAAGGGGCAAUAAAACGAAAUUGCACCACUGCAGGGUCUAACAAUUCGAUGCCACA--------- -----.((((((...........(((((....))))).....(((..((.(((....))).))........((..(((((....)))))..))......)))))))))...--------- ( -28.20, z-score = -1.81, R) >droSim1.chr3R 12801055 106 - 27517382 -----CGGUGUCUUAAGUUCUCCGAUUCCCAAGAAUCACUCAGAAAAGCGCCUGAUAAGGGGCAAUAAAACGAAAUUGCACCAUUGCAGGGUCUAACAAUUCGAUGCCACA--------- -----.((((((...........(((((....))))).....(((..((.(((....))).))........((..(((((....)))))..))......)))))))))...--------- ( -28.20, z-score = -1.78, R) >consensus _____CGGUGUCUUAAGUUCUCCGAUUCCCAAGAAUCACUCAGAAAAGCGCCUGAUAAGGGGCAAUAAAACGAAAUUGCACCAAUGCAGGGUCUAACAAUUCGAUGCCACA_________ ......((((((...........(((((....)))))..........((.((((....((.(((((........))))).))....))))))..........))))))............ (-18.46 = -19.60 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:04:18 2011