| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,649,934 – 6,650,024 |
| Length | 90 |
| Max. P | 0.822208 |
| Location | 6,649,934 – 6,650,024 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 75.86 |
| Shannon entropy | 0.43449 |
| G+C content | 0.44406 |
| Mean single sequence MFE | -24.38 |
| Consensus MFE | -9.76 |
| Energy contribution | -11.54 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.822208 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6649934 90 - 27905053 GCACCCAGCAGUCAUCGCUAUCGCA---CCGUCUCCACUUUCUUA------AAUUAUUUUUAGGGUAAUCAAU---AGAACGAGGCGGUGCGAAGGGAAAGA ...((((((.......))).(((((---(((((((.....(((((------((.....)))))))...((...---.))..)))))))))))).)))..... ( -32.90, z-score = -4.68, R) >droEre2.scaffold_4770 2785485 87 + 17746568 GCACCCAGCAGU------UAUCGCA---CCGUCUACACUUUCUCA------AAUUAUUUUUGGGGUAAUCAAUAGGAGAACGAGGUGGCGCGAAGGGAAAGA ...(((......------..((((.---((..((.(.....((((------((.....))))))((..((.....))..)))))..)).)))).)))..... ( -19.50, z-score = -0.09, R) >droYak2.chr3R 10683540 87 - 28832112 GCACCCAGCAGU------UAUCGCG---CCGUCUCCACUUUCUUA------AAUUAUUUUUAGGGUAAUCAAUAGAAGAACGAGGUGGCGCGAAGGGAAAGA ...(((......------..(((((---((..(((...(((((..------.((((((.....))))))....)))))...)))..))))))).)))..... ( -26.40, z-score = -2.30, R) >droSec1.super_0 5820271 90 + 21120651 GCACCCAGCAGUUAUCGCUAUCGCA---CCGUCUCCACUUUCUCA------AAUUAUUUUUAGGGUAAUCAAU---AGAACGAGGCGGUGCGAAGGGAAAGA ...((((((.......))).(((((---(((((((....((((..------.((((((.....))))))....---)))).)))))))))))).)))..... ( -31.90, z-score = -4.33, R) >droSim1.chr3R 12800744 90 + 27517382 GCACCCAGCAGUUAUCGCUAUCGCA---CCGUCUCCACUUUCUCA------AAUUAUUUUUAGGGUAAUCAAU---AGAACGAGGCGGUGCGAAGGGAAAGA ...((((((.......))).(((((---(((((((....((((..------.((((((.....))))))....---)))).)))))))))))).)))..... ( -31.90, z-score = -4.33, R) >droWil1.scaffold_181130 5885762 102 - 16660200 GCUCUCACAAACCACAUUUACCGUACGCCCUUUUCUUCUUCUUUAUUUUUCAACUAUUUUUAGUGUAAUCAAUAAAAUUAAAACGUAAAACCGCUCGUCUGA .....................((.(((..............((((((.....((((....))))......)))))).......((......))..))).)). ( -3.70, z-score = 1.00, R) >consensus GCACCCAGCAGU_AUCGCUAUCGCA___CCGUCUCCACUUUCUCA______AAUUAUUUUUAGGGUAAUCAAU___AGAACGAGGCGGUGCGAAGGGAAAGA ...(((...((......)).(((((...(((((((....((((.........((((((.....)))))).......)))).)))))))))))).)))..... ( -9.76 = -11.54 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:04:17 2011