| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,647,185 – 6,647,279 |
| Length | 94 |
| Max. P | 0.541086 |
| Location | 6,647,185 – 6,647,279 |
|---|---|
| Length | 94 |
| Sequences | 13 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 73.49 |
| Shannon entropy | 0.55043 |
| G+C content | 0.40505 |
| Mean single sequence MFE | -18.90 |
| Consensus MFE | -11.09 |
| Energy contribution | -11.10 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.69 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.541086 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6647185 94 - 27905053 ----------GGCCAAAACUUGCGACGCUGCAAAACGAGCGCAUUAUUUAAUAAUACCGUUUGUUU-------AUUGAAUCGCAGUCAAAACUUUUGGCACAGACGGAAAC ----------.(((((((..(((((..(....(((((((((.(((((...)))))..)))))))))-------...)..)))))((....)))))))))......(....) ( -22.00, z-score = -1.34, R) >droEre2.scaffold_4770 2782716 94 + 17746568 ----------GGCCAAAACUUGCGACGCUGCAAAACGAGCGCAUUAUUUAAUAAUACCGUUUGUUU-------AUUGAAUCGCAGUCAAAACUUUUGGCACAGACGGAAAC ----------.(((((((..(((((..(....(((((((((.(((((...)))))..)))))))))-------...)..)))))((....)))))))))......(....) ( -22.00, z-score = -1.34, R) >droYak2.chr3R 10680625 95 - 28832112 ---------GGCCAAAAACUUGCGACGCUGCAAAACGAGCGCAUUAUUUAAUAAUACCGUUUGUUU-------AUUGAAUCGCAGUCAAAACUUUUGGCACAGACGGAAAC ---------.((((((((((.((((..(....(((((((((.(((((...)))))..)))))))))-------...)..)))))))......)))))))......(....) ( -22.90, z-score = -1.64, R) >droSec1.super_0 5817518 94 + 21120651 ----------GGCCAAAACUUGCGACGCUGCAAAACGAGCGCAUUAUUUAAUAAUACCGUUUGUUU-------AUUGAAUCGCAGUCAAAACUUUUGGCACAGACGGAAAC ----------.(((((((..(((((..(....(((((((((.(((((...)))))..)))))))))-------...)..)))))((....)))))))))......(....) ( -22.00, z-score = -1.34, R) >droSim1.chr3R 12798020 94 + 27517382 ----------GGCCAAAACUUGCGACGCUGCAAAACGAGCGCAUUAUUUAAUAAUACCGUUUGUUU-------AUUGAAUCGCAGUCAAAACUUUUGGCACAGACGGAAAC ----------.(((((((..(((((..(....(((((((((.(((((...)))))..)))))))))-------...)..)))))((....)))))))))......(....) ( -22.00, z-score = -1.34, R) >droAna3.scaffold_13340 6960008 97 - 23697760 -------UUCUCGGCCAACUUGCGACGCUGCGAAACGAGCGCAUUAUUUAAUAAUACCGUUUGUUU-------AUUGAAUCGCAGUCAAAACUUUUGGCACAGACGGAAAC -------(((((.(((((........(((((((((((((((.(((((...)))))..)))))))).-------......)))))))........)))))...)).)))... ( -24.40, z-score = -1.43, R) >dp4.chr2 12843769 82 + 30794189 ---------------------GAC-UAGGACUCUUAGAGAGCAUUAUUUAAUAAUACCGUUUGUUU-------AUUGAAUCGCAGUCAAAACUUUUGGCACAGACGGAAAC ---------------------...-(((..(((.....)))..)))..........((((((((..-------..((.....))(((((.....))))))))))))).... ( -15.00, z-score = -1.13, R) >droPer1.super_3 7287791 82 + 7375914 ---------------------GAC-UGGGACUCUUAGAGAGCAUUAUUUAAUAAUACCGUUUGUUU-------AUUGAAUCGCAGUCAAAACUUUUGGCACAGACGGAAAC ---------------------(((-((.(((((.....))).....((((((((..........))-------)))))))).))))).....(((((.......))))).. ( -15.20, z-score = -0.93, R) >droMoj3.scaffold_6540 31910468 95 + 34148556 --------GGCUUAAGCAAGCAUG-CACUACAAAUCGGGUGAAAUAUUUAAUGAUCCCGUUUGUUU-------AUUGAAUUGCAGUCAAAAGUUUUGGCACGGACGGAAGC --------.((((..((..(((..-((..(((((.((((................)))))))))..-------..))...))).(((((.....)))))...).)..)))) ( -19.29, z-score = 0.30, R) >droWil1.scaffold_181130 5881810 103 - 16660200 AACCAGCCCCCUCUUAGAAGCAUU-UGCUGCAAAACGAGCGCAAUAUUUAAUAAUCCCGUUUGUUU-------AUUGAAUCGCAGUCAAAACUUUUGGCACAGACGGAAAC ........((.(((((((((..((-((((((.(((((((((..((........))..)))))))))-------........)))).)))).))))))....))).)).... ( -18.30, z-score = -0.16, R) >droGri2.scaffold_14906 932803 79 + 14172833 -----------------AAGCAUG-C-------AGCGGGCCAAAUAUUUAAUGAUCCCGUUUGUUU-------AUUGAAUUGCAGUCAAAACUUUUGGCACGGACGGAAAC -----------------..((...-.-------.))....................((((((((..-------..((.....))(((((.....))))))))))))).... ( -13.10, z-score = 1.20, R) >droVir3.scaffold_12855 96359 91 - 10161210 ------------AGCCGAAGCAUG-CUCUACAAAUCGGACGAAAUAUUUAAUGAUCCCGUUUGUUU-------AUUGAAUUGCAGUCAAAAGUUUUGGCACGGACGGAAAC ------------.((((((((.((-.....)).....(((.....(((((((((..........))-------)))))))....)))....))))))))......(....) ( -18.60, z-score = -0.15, R) >apiMel3.Group2 5764893 101 - 14465785 ----------GCCAAAAAUUUGCAUCGUUGCAAAUCGAACUUGUUACUUUCUUAUACCACUUCUUUAAUCUAGAUCCAAUCGUAAAAGACACUUUCCACGGAAACAGAAGC ----------.......(((((((....))))))).....(((((....((((.(((....(((.......))).......))).)))).....((....))))))).... ( -10.90, z-score = 0.28, R) >consensus __________G_CCAAAACUUGCG_CGCUGCAAAACGAGCGCAUUAUUUAAUAAUACCGUUUGUUU_______AUUGAAUCGCAGUCAAAACUUUUGGCACAGACGGAAAC ........................................................((((((((...........((.....))(((((.....))))))))))))).... (-11.09 = -11.10 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:04:16 2011