| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,576,234 – 6,576,336 |
| Length | 102 |
| Max. P | 0.631259 |
| Location | 6,576,234 – 6,576,336 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 62.90 |
| Shannon entropy | 0.71185 |
| G+C content | 0.43391 |
| Mean single sequence MFE | -29.06 |
| Consensus MFE | -8.89 |
| Energy contribution | -11.09 |
| Covariance contribution | 2.19 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.631259 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6576234 102 + 27905053 UUUUAAUUUUGGCC---UGUGGUCAAGGACGAGUUGCGUUUAACACUGCAUGUGGCCCUUUGGUCACAAAACUGUCAACCUUGCAAUCGUUAAAUAUAAGUUUAA-------- .......(((((((---...)))))))(((((.((((((........)).(((((((....)))))))..............)))))))))..............-------- ( -24.60, z-score = -0.82, R) >droSim1.chr3R 12732446 99 - 27517382 UUUUAUUUUUGGCC---GGUGGUCAAGGACGAGUUGCGUUCAACGAUGCAUGUGGCCAUUUGGUCACAAAACUGUCAACCUUGCAGU---UAAAAAUAAGUUUAU-------- .((((((((((((.---(..(((....(((.(((((((((....))))).(((((((....))))))).))))))).)))...).))---)))))))))).....-------- ( -30.60, z-score = -2.65, R) >droSec1.super_0 5754989 102 - 21120651 UUUUAUUUUUGGCC---UGUGGUCAAGGACGAGUUGCGUUUAAAGAUGCAUGUGGCCAUUUGGUCACAAAACUGUCAACCUUGCAGUCGUUAAAAAUAAGUUUAU-------- .(((((((((((((---((((((....(((.(((((((((....))))).(((((((....))))))).))))))).)))..))))..)))))))))))).....-------- ( -33.70, z-score = -3.83, R) >droYak2.chr3R 10616807 101 + 28832112 UUUUAAUUUUGGCC---GCUGGUCAAGGACGAGUUGCGUUCAACACUGCAUGUGGCCAUUUGGUCACAAAACUGUCAACCUUGCAACC-UCGCAAACAAGUUUAA-------- ..((((.((((...---((.((((((((..((((((....))))......(((((((....)))))))......))..)))))..)))-..))...)))).))))-------- ( -26.30, z-score = -0.63, R) >droEre2.scaffold_4770 2719005 101 - 17746568 UUUUAAUUUUGGCC---GGUGGUCAAGGACGAGAUGCGUUUAACACUGCAUGUGGCCAUUUGGUCACAAAACUGUCAACCUUGCAACC-UUGAAAACGAGUUUAA-------- ..........(((.---.((..((((((.(((((((((........)))))((((((....))))))............))))...))-))))..))..)))...-------- ( -26.10, z-score = -0.63, R) >droAna3.scaffold_13340 1222230 112 + 23697760 UCUUAAUUUGGGGGCGGGGUGGUGGACGACAAGUGGCAUUACCCGCUGCAUGUGGCAAGUUGG-CGCCAUUUAGGGGUUCGGGGAAGUGGCCAACGUUUCUCUGUCACUUCCA ((((((..(((.(.((((((((((.((.....))..))))))))((((....))))....)).-).))).))))))......(((((((((............))))))))). ( -37.70, z-score = 0.11, R) >droGri2.scaffold_14830 3271843 80 - 6267026 --------------------CUUUAAUUAUAUGUUGCGGUCUUCACU-CUUAUGCAUAUACAGCGAGGAUUACGCUGCCUGUGCUGAGGGUGCAAGUUAAA------------ --------------------....................(((((((-((((.(((((..(((((.......)))))..))))))))))))).))).....------------ ( -24.40, z-score = -2.07, R) >consensus UUUUAAUUUUGGCC___GGUGGUCAAGGACGAGUUGCGUUCAACACUGCAUGUGGCCAUUUGGUCACAAAACUGUCAACCUUGCAAUCGUUAAAAAUAAGUUUAA________ ......((((((((......)))))))).((((..(((........))).(((((((....)))))))...........)))).............................. ( -8.89 = -11.09 + 2.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:04:10 2011