| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,563,099 – 6,563,218 |
| Length | 119 |
| Max. P | 0.782185 |
| Location | 6,563,099 – 6,563,218 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 138 |
| Reading direction | forward |
| Mean pairwise identity | 74.45 |
| Shannon entropy | 0.41734 |
| G+C content | 0.39923 |
| Mean single sequence MFE | -32.21 |
| Consensus MFE | -13.37 |
| Energy contribution | -14.13 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.782185 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6563099 119 + 27905053 -GCAAGCCCUGAGGUCAUCUUUAUACGAGCUGUUAACAAUUGAGGACAGCCCUGUGUACUGACCAUGCCUCAAUUGUCUCUAAUUGACAAACGAUAACUAAAUAUGGUCUUGACUAGCAA------------------ -.((((.((((((((..((..((((((.((((((..(....)..))))))..))))))..))....)))))).(((((.......)))))...............)).))))........------------------ ( -31.10, z-score = -2.30, R) >droEre2.scaffold_4770 2705377 138 - 17746568 GCCAAGACCAGGAGAUAUCUUUAUACGGGCUGUUAACAAUUGCGGAUAGCAAUGCUUACUGUCCACAUAUCAAUUGUAUAUAAUUGACAAACAAUAACUAAAUAUUUUAUCUGAUAGAGGAGCUGACUUGACUUGCGA ((.(((..((((((...(((((((..((((.((.....(((((.....)))))....)).)))).....(((((((....)))))))..........................)))))))..))..)))).))))).. ( -25.90, z-score = -0.27, R) >droYak2.chr3R 10603168 138 + 28832112 GCAAAGCCCGGAGGUCAACUUUAUACGGGCUGUUAACAAUUGUGGACAGCCCGGUUUACUGACCACAUAUCAAUUGUUUCUAAUUGACAAACAAUUACUAAAUAUUUGAUCUGAUAGAAGUGCUGACUUGACUUGCGA ........((.(((((((.((..(((((((((((.((....)).))))))))((((....)))).((.(((((.(((((.((((((.....))))))..))))).))))).))......)))..)).))))))).)). ( -43.10, z-score = -4.58, R) >droSec1.super_0 5741858 119 - 21120651 -GCAAGACCUGAGGUCAUCUUUAUACUGGCUGUUAACAAUUGAGGACAGUCCUGUUUACUGACCAUGCCUCAAUAGUCUCUAAUUGACAAACGAUAACUAAAUAUUGUCUUGACUUGCCA------------------ -(((((...((((((..((..((.((.(((((((..(....)..)))))))..)).))..))....))))))...(((.......)))..((((((......)))))).....)))))..------------------ ( -28.00, z-score = -1.88, R) >droSim1.chr3R 12719204 119 - 27517382 -GCAAGCCCUGAGGUCAUCUUUAUACGGGCUGUUAACAAUUGAGGACAGUCCUGUUUACUCAGCAUGCCUCAAUUGUCCCUAAUUGACAAACGAUAACUAAAUAUUGUCUUGACUUGCCA------------------ -(((((((((((((....)))))...)))))((((((((((((((.((...(((......)))..))))))))))))........(((((..............))))).)))).)))..------------------ ( -32.94, z-score = -2.81, R) >consensus _GCAAGCCCUGAGGUCAUCUUUAUACGGGCUGUUAACAAUUGAGGACAGCCCUGUUUACUGACCAUGCCUCAAUUGUCUCUAAUUGACAAACGAUAACUAAAUAUUGUCUUGACUAGCAA__________________ ............(((((.........((((((((..(....)..)))))))).......))))).....(((((((....)))))))................................................... (-13.37 = -14.13 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:04:06 2011