| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,560,882 – 6,561,006 |
| Length | 124 |
| Max. P | 0.910917 |
| Location | 6,560,882 – 6,561,006 |
|---|---|
| Length | 124 |
| Sequences | 6 |
| Columns | 132 |
| Reading direction | reverse |
| Mean pairwise identity | 79.26 |
| Shannon entropy | 0.38682 |
| G+C content | 0.40287 |
| Mean single sequence MFE | -34.42 |
| Consensus MFE | -22.73 |
| Energy contribution | -23.70 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.910917 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6560882 124 - 27905053 --AUACUCGUAUCUCG-----UUUUAUUCGUUGCCAGGGCCAACUUGGCAAAGAAUUUGUGGGAUGAGGGAACUUUGCAGCCAUUAGCCAAGUUGGCA-AAUUAAUGACCUCGAUUAUAAUGUCGAGCGUAA --...(((.(((((((-----....((((.((((((((.....)))))))).))))...))))))).)))...........((((((((.....))).-...)))))((((((((......)))))).)).. ( -38.80, z-score = -2.36, R) >droSim1.chr3R 12716977 124 + 27517382 --AUACUCGUAUCUCG-----UUUUAUUCGUUGCCAGGGCCAACUUGGCAAACAAUUUGUGGGAUGAGGGAACUUUGCAGCCAUUAGCCAAGUUGGCA-AAUUAACGACCUCGAUUAUAAUGUCGAGCGUAA --.(((..........-----......((((((.....(((((((((((..((.....)).((..(((....))).....))....))))))))))).-...)))))).((((((......)))))).))). ( -38.40, z-score = -2.35, R) >droSec1.super_0 5739682 124 + 21120651 --AUACUCGUAUCUCG-----UUUUAUUCGUUGCCAGGGCCAACUUGGCAAACAAUUUGUGGGAUGAGGGAACUUUGCAGCCAUUAGCCAAGUUGGCA-AAUUAACGACCUCGAUUAUAAUGUCGAACGUAA --.....(((......-----......((((((.....(((((((((((..((.....)).((..(((....))).....))....))))))))))).-...))))))..(((((......))))))))... ( -36.20, z-score = -2.02, R) >droYak2.chr3R 10600985 124 - 28832112 --AUACUGGUAUCUCG-----UUUUAUUCGUUGCCAGGGCCAACUUGCUCAACAAUUUGUGGAAUAAGGCAACUUUACAGCCAUUAGCCAAGUUGGCA-AAUUAAUGACCUCGAUUAUAAUGUCGAGCGUAA --...((((((...((-----.......)).)))))).(((((((((((.........((((...(((....))).....)))).)).))))))))).-........((((((((......)))))).)).. ( -38.30, z-score = -3.38, R) >droEre2.scaffold_4770 2703218 126 + 17746568 AUACACUGGUAUCUCG-----UUUCAUUCGUUGCCAGGGCCAACUUGUUCGACAAUUUGUGGAAUGAGGGCACUUUACAGCCAUUAGCCAAGUUGGCA-AAUUAAUGACCUCGAUUAUAAUGUCGAGCGUAA .....((((((...((-----.......)).)))))).((((((((((((.((.....)).)))(((.(((........))).)))..))))))))).-........((((((((......)))))).)).. ( -39.60, z-score = -2.86, R) >droWil1.scaffold_181089 4468063 122 - 12369635 --AAAUUUGUGUAUUAAAAAUUUCUUUUCAUUUUGGGGG----GUUAGCUAAGAACUUUUG----CCGGACUUUUAAAAAGAAUCAACCAAGUUUGCGUAUUUAAUUACCUCAAUUAGAUUAUUGCUCAUGA --(((((((.((..............(((.(((((((((----.(..((...........)----)..).))))))))).)))...)))))))))(((.((((((((.....))))))))...)))...... ( -15.23, z-score = 1.86, R) >consensus __AUACUCGUAUCUCG_____UUUUAUUCGUUGCCAGGGCCAACUUGGCAAACAAUUUGUGGGAUGAGGGAACUUUACAGCCAUUAGCCAAGUUGGCA_AAUUAAUGACCUCGAUUAUAAUGUCGAGCGUAA ...........................((((((.....(((((((((((.......(((((....(((....))))))))......))))))))))).....)))))).((((((......))))))..... (-22.73 = -23.70 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:04:02 2011